miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 14034 0.66 0.96544
Target:  5'- aGCGCCG--AUGUACCUGCagCUCGa- -3'
miRNA:   3'- cCGCGGUuuUGCGUGGAUGg-GAGCcg -5'
30243 3' -55.5 NC_006273.1 + 41574 0.66 0.962203
Target:  5'- uGCGCUGucgccgcCGCGCCaUAgccUCCUCGGCu -3'
miRNA:   3'- cCGCGGUuuu----GCGUGG-AU---GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 24586 0.66 0.96544
Target:  5'- gGGCGcCCGAggUGCuccuCCUgguGCCUgUGGCc -3'
miRNA:   3'- -CCGC-GGUUuuGCGu---GGA---UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 195181 0.66 0.96544
Target:  5'- gGGCGCCAAAACGCcgucggacGCCgugcagaacAUCCUCc-- -3'
miRNA:   3'- -CCGCGGUUUUGCG--------UGGa--------UGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 107268 0.66 0.96544
Target:  5'- cGCGCuCAAGACGCugUgccACCCggugCuGCa -3'
miRNA:   3'- cCGCG-GUUUUGCGugGa--UGGGa---GcCG- -5'
30243 3' -55.5 NC_006273.1 + 21696 0.66 0.96544
Target:  5'- uGUGCCAGc-CGuCGCCgcagGCCUuugUCGGCg -3'
miRNA:   3'- cCGCGGUUuuGC-GUGGa---UGGG---AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 138748 0.66 0.962203
Target:  5'- gGGCGUgAGguucuGGCuGCACCcGCCCgaucccucgUCGGCu -3'
miRNA:   3'- -CCGCGgUU-----UUG-CGUGGaUGGG---------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 83391 0.66 0.973974
Target:  5'- gGGCugcuGCCGccGC-CACCcgGCCCggCGGCg -3'
miRNA:   3'- -CCG----CGGUuuUGcGUGGa-UGGGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 18521 0.66 0.968478
Target:  5'- aGgGCCu--GCGCGCCUGCC---GGCc -3'
miRNA:   3'- cCgCGGuuuUGCGUGGAUGGgagCCG- -5'
30243 3' -55.5 NC_006273.1 + 68014 0.66 0.968478
Target:  5'- cGGCGUCAugGGugGCGgaggaCUGCCggcaggugugggCUCGGCc -3'
miRNA:   3'- -CCGCGGU--UUugCGUg----GAUGG------------GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 92216 0.66 0.969923
Target:  5'- cGGUGCgAGcaguuggggaugcGGCGCGCCgUGCCCgucuccugaaagaCGGCc -3'
miRNA:   3'- -CCGCGgUU-------------UUGCGUGG-AUGGGa------------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 196794 0.66 0.96544
Target:  5'- cGGCacaGCCGcAGGCGC-UCUGCCagUUGGCg -3'
miRNA:   3'- -CCG---CGGU-UUUGCGuGGAUGGg-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 84598 0.66 0.973198
Target:  5'- uGCGCgAAAGCuucggccggcugcuGCACCacagcGCCCggCGGCu -3'
miRNA:   3'- cCGCGgUUUUG--------------CGUGGa----UGGGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 204793 0.66 0.971321
Target:  5'- cGGCGCCGGuGC-CGCCgg-UCUCGcGCa -3'
miRNA:   3'- -CCGCGGUUuUGcGUGGaugGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 140172 0.66 0.968478
Target:  5'- uGGgGuCCGAG--GCGCCgACCC-CGGCu -3'
miRNA:   3'- -CCgC-GGUUUugCGUGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 162004 0.66 0.973974
Target:  5'- uGGCuGCCc--GCGCGCUUugcgACUCUgGGCc -3'
miRNA:   3'- -CCG-CGGuuuUGCGUGGA----UGGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 84169 0.66 0.974229
Target:  5'- cGGC-CCAGAGCGUgucgGCCgauuucgaaauggagGCCCUgaugauccgCGGCg -3'
miRNA:   3'- -CCGcGGUUUUGCG----UGGa--------------UGGGA---------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 213668 0.67 0.93834
Target:  5'- gGGCGagaAGAGcCGCGCCgacaaagGCCUgCGGCg -3'
miRNA:   3'- -CCGCgg-UUUU-GCGUGGa------UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 90844 0.67 0.960162
Target:  5'- cGCGCCuccacaAAAGCGCugCgcgcauccagcgagACCUcgUCGGCu -3'
miRNA:   3'- cCGCGG------UUUUGCGugGa-------------UGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 218289 0.67 0.960162
Target:  5'- cGGCGUuccgCGAAgucgccgcggaccacGCGCGCCUGCCagaUGGUa -3'
miRNA:   3'- -CCGCG----GUUU---------------UGCGUGGAUGGga-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.