miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 122789 0.67 0.942862
Target:  5'- uGGCGCCGuucuCGuCGCUUACCaguaCGGUu -3'
miRNA:   3'- -CCGCGGUuuu-GC-GUGGAUGGga--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 40714 0.67 0.955109
Target:  5'- cGGCGCUuuguGCGCA-CUGCCgUugcgUGGCg -3'
miRNA:   3'- -CCGCGGuuu-UGCGUgGAUGGgA----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 82595 0.67 0.95876
Target:  5'- uGCGCCAGAGCGUGCaaacggGCgugCUgGGCg -3'
miRNA:   3'- cCGCGGUUUUGCGUGga----UGg--GAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 38316 0.67 0.955109
Target:  5'- cGGCGCCGc--CGCugCUGCCgCUgCcGCc -3'
miRNA:   3'- -CCGCGGUuuuGCGugGAUGG-GA-GcCG- -5'
30243 3' -55.5 NC_006273.1 + 183575 0.67 0.95876
Target:  5'- aGGgGCC---GCGCACUuuUGCCaagUCGGUg -3'
miRNA:   3'- -CCgCGGuuuUGCGUGG--AUGGg--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 45210 0.67 0.936469
Target:  5'- cGCGCCGAAggcaagaagaagcuGCugcugaaGCACUUGCCCgugccgccCGGCg -3'
miRNA:   3'- cCGCGGUUU--------------UG-------CGUGGAUGGGa-------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 171078 0.67 0.955109
Target:  5'- gGGCGCCGAuucccAGgGCGCCUccaagaACUCgcguaaGGCg -3'
miRNA:   3'- -CCGCGGUU-----UUgCGUGGA------UGGGag----CCG- -5'
30243 3' -55.5 NC_006273.1 + 213668 0.67 0.93834
Target:  5'- gGGCGagaAGAGcCGCGCCgacaaagGCCUgCGGCg -3'
miRNA:   3'- -CCGCgg-UUUU-GCGUGGa------UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 36768 0.67 0.95876
Target:  5'- gGGUgGCCuGAGCaCGCCgagGCCCaguggCGGCa -3'
miRNA:   3'- -CCG-CGGuUUUGcGUGGa--UGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 197133 0.67 0.95876
Target:  5'- cGGCGUCGGGgaccgugccGCGCGCCaUGCUggUGGUg -3'
miRNA:   3'- -CCGCGGUUU---------UGCGUGG-AUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 22322 0.67 0.955109
Target:  5'- cGGCGCCAacGAACGCcgcgacuCCga-CgUCGGUc -3'
miRNA:   3'- -CCGCGGU--UUUGCGu------GGaugGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 776 0.67 0.955109
Target:  5'- cGGCGCUuuguGCGCA-CUGCCgUugcgUGGCg -3'
miRNA:   3'- -CCGCGGuuu-UGCGUgGAUGGgA----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 94401 0.67 0.955109
Target:  5'- gGGCGCgGcc-CGCuCCggaCCUCGGCc -3'
miRNA:   3'- -CCGCGgUuuuGCGuGGaugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 119525 0.67 0.953589
Target:  5'- aGGUGCgGGuacggauuguguCGCGCCaccaCCUCGGCg -3'
miRNA:   3'- -CCGCGgUUuu----------GCGUGGaug-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 37083 0.67 0.951244
Target:  5'- gGGCcaGCCcagcGAcACGCACgaGCCCUCGaaGCg -3'
miRNA:   3'- -CCG--CGG----UUuUGCGUGgaUGGGAGC--CG- -5'
30243 3' -55.5 NC_006273.1 + 146905 0.67 0.947163
Target:  5'- aGCGUgCGGAACuGCACCgUACCUUUGaGCu -3'
miRNA:   3'- cCGCG-GUUUUG-CGUGG-AUGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 23336 0.67 0.95876
Target:  5'- gGGCGCCcccACcC-CCgcgACCCUCGcGCg -3'
miRNA:   3'- -CCGCGGuuuUGcGuGGa--UGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 63095 0.67 0.955109
Target:  5'- gGGUGCCAcggaggcgGAGCGCGagUACCUguaUCGGg -3'
miRNA:   3'- -CCGCGGU--------UUUGCGUggAUGGG---AGCCg -5'
30243 3' -55.5 NC_006273.1 + 73750 0.67 0.942862
Target:  5'- cGGCgGCCGAGGCccggcagcgGCGCC-GCCagCGGCg -3'
miRNA:   3'- -CCG-CGGUUUUG---------CGUGGaUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 36912 0.67 0.942862
Target:  5'- cGGCGCCGuacGCGuCACgaACaCCUgguacCGGCa -3'
miRNA:   3'- -CCGCGGUuu-UGC-GUGgaUG-GGA-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.