Results 41 - 60 of 368 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30243 | 3' | -55.5 | NC_006273.1 | + | 190581 | 0.73 | 0.710762 |
Target: 5'- cGGCuGCCGAGucACGUccGCCggcGCCCaUCGGCc -3' miRNA: 3'- -CCG-CGGUUU--UGCG--UGGa--UGGG-AGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 199625 | 0.73 | 0.691293 |
Target: 5'- aGgGCCGGAGCGCGUCUuCCC-CGGCu -3' miRNA: 3'- cCgCGGUUUUGCGUGGAuGGGaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 40908 | 0.73 | 0.681485 |
Target: 5'- cGGCGUCG--ACGCACCgucUGCgCUCGGg -3' miRNA: 3'- -CCGCGGUuuUGCGUGG---AUGgGAGCCg -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 61423 | 0.73 | 0.680502 |
Target: 5'- cGCGCCcGGcUGCGCCUcgaacucuaccagGCCCUCGGg -3' miRNA: 3'- cCGCGGuUUuGCGUGGA-------------UGGGAGCCg -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 199575 | 0.73 | 0.720406 |
Target: 5'- cGGCGCUucu-CGUGCCUGCgCCaggCGGCc -3' miRNA: 3'- -CCGCGGuuuuGCGUGGAUG-GGa--GCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 171756 | 0.73 | 0.691293 |
Target: 5'- uGCGCUAcgGAGCGCGCCaUGagCUCGGCc -3' miRNA: 3'- cCGCGGU--UUUGCGUGG-AUggGAGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 117946 | 0.73 | 0.691293 |
Target: 5'- --aGCCGGcGACGCACCUGCCa-CGGUa -3' miRNA: 3'- ccgCGGUU-UUGCGUGGAUGGgaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 87509 | 0.73 | 0.720406 |
Target: 5'- uGGCGCgaugcaCAGcACGCACCUcaGCCggCGGCa -3' miRNA: 3'- -CCGCG------GUUuUGCGUGGA--UGGgaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 144046 | 0.73 | 0.720406 |
Target: 5'- -uCGCCAAGAUGCugCggGCCCaCGGUa -3' miRNA: 3'- ccGCGGUUUUGCGugGa-UGGGaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 199688 | 0.73 | 0.681485 |
Target: 5'- gGGCacGCCuuuGCGUACCUGCCC--GGCg -3' miRNA: 3'- -CCG--CGGuuuUGCGUGGAUGGGagCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 162832 | 0.73 | 0.691293 |
Target: 5'- cGGgGCCucauCGCAgCCUugCgUCGGCa -3' miRNA: 3'- -CCgCGGuuuuGCGU-GGAugGgAGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 201955 | 0.73 | 0.681485 |
Target: 5'- uGCGCCGGGgcugucGCGCGCCgccgacGCCCgaggCGGUg -3' miRNA: 3'- cCGCGGUUU------UGCGUGGa-----UGGGa---GCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 47821 | 0.73 | 0.720406 |
Target: 5'- aGCGCCGGuucGCGgACCUgucgucgcugGgCCUCGGCg -3' miRNA: 3'- cCGCGGUUu--UGCgUGGA----------UgGGAGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 220466 | 0.72 | 0.767394 |
Target: 5'- --gGCCGugGCGUACgaGCCCUCaGGCg -3' miRNA: 3'- ccgCGGUuuUGCGUGgaUGGGAG-CCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 114220 | 0.72 | 0.776485 |
Target: 5'- cGCGCCGccuCGgAUCUACUCaUCGGCa -3' miRNA: 3'- cCGCGGUuuuGCgUGGAUGGG-AGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 197280 | 0.72 | 0.780088 |
Target: 5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3' miRNA: 3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 164789 | 0.72 | 0.776485 |
Target: 5'- cGGCGCuCAGAcaaaacACGCgaGCCUGCUCgUCGGg -3' miRNA: 3'- -CCGCG-GUUU------UGCG--UGGAUGGG-AGCCg -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 51993 | 0.72 | 0.758189 |
Target: 5'- cGUGCCAGAACuGCGCC-AUgCUgGGCg -3' miRNA: 3'- cCGCGGUUUUG-CGUGGaUGgGAgCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 144171 | 0.72 | 0.72998 |
Target: 5'- cGCGCCGAGAU-CGCCgagGCCCUgGaGCg -3' miRNA: 3'- cCGCGGUUUUGcGUGGa--UGGGAgC-CG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 89517 | 0.72 | 0.739474 |
Target: 5'- cGGCuGCUcuuGAGGCGCACCUccgaaacgaaACCCagGGCc -3' miRNA: 3'- -CCG-CGG---UUUUGCGUGGA----------UGGGagCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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