Results 61 - 80 of 368 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30243 | 3' | -55.5 | NC_006273.1 | + | 79040 | 0.72 | 0.758189 |
Target: 5'- uGCGCCAGGcugggcccACGCGCCaccagaGCCUgCGGCg -3' miRNA: 3'- cCGCGGUUU--------UGCGUGGa-----UGGGaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 190532 | 0.72 | 0.739474 |
Target: 5'- gGGCGCCAcuccuACGcCACgCgauugGCCgUCGGCg -3' miRNA: 3'- -CCGCGGUuu---UGC-GUG-Ga----UGGgAGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 171302 | 0.72 | 0.758189 |
Target: 5'- cGGCGCCAuugGAACGUugcGCCUGCUCga-GCg -3' miRNA: 3'- -CCGCGGU---UUUGCG---UGGAUGGGagcCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 81335 | 0.72 | 0.776485 |
Target: 5'- aGCGCCGAGA-GCACgUcaacGCCCUUGcGCa -3' miRNA: 3'- cCGCGGUUUUgCGUGgA----UGGGAGC-CG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 131039 | 0.72 | 0.776485 |
Target: 5'- cGCGCUAccuggccGCGCGCCaGCCCaucccccucUCGGCg -3' miRNA: 3'- cCGCGGUuu-----UGCGUGGaUGGG---------AGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 230437 | 0.72 | 0.776485 |
Target: 5'- cGGCuuccCCAGAuCGCugCUGCUC-CGGCg -3' miRNA: 3'- -CCGc---GGUUUuGCGugGAUGGGaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 2387 | 0.72 | 0.780088 |
Target: 5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3' miRNA: 3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 198757 | 0.72 | 0.780088 |
Target: 5'- uGCGCCuacguaGAGGCGCACCgcgaggcgcaacugACCCUCaucuGGCc -3' miRNA: 3'- cCGCGG------UUUUGCGUGGa-------------UGGGAG----CCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 89517 | 0.72 | 0.739474 |
Target: 5'- cGGCuGCUcuuGAGGCGCACCUccgaaacgaaACCCagGGCc -3' miRNA: 3'- -CCG-CGG---UUUUGCGUGGA----------UGGGagCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 69408 | 0.71 | 0.785455 |
Target: 5'- uGGCGCUgcGAGACGaugGCCgACCCcUGGCa -3' miRNA: 3'- -CCGCGG--UUUUGCg--UGGaUGGGaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 95028 | 0.71 | 0.785455 |
Target: 5'- cGGcCGCCAGu-CGUgACCggggguCCCUCGGCc -3' miRNA: 3'- -CC-GCGGUUuuGCG-UGGau----GGGAGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 87424 | 0.71 | 0.785455 |
Target: 5'- cGCGCCAAcacGGCGCuACgCUGCUCUaGGCc -3' miRNA: 3'- cCGCGGUU---UUGCG-UG-GAUGGGAgCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 42577 | 0.71 | 0.794296 |
Target: 5'- cGUGCCGAucACGCGCCgcaagugcGCUugCUCGGCa -3' miRNA: 3'- cCGCGGUUu-UGCGUGGa-------UGG--GAGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 93649 | 0.71 | 0.782778 |
Target: 5'- uGGCGCCGGcGCGC-CCUGCUgggacgacgcaauggCGGCg -3' miRNA: 3'- -CCGCGGUUuUGCGuGGAUGGga-------------GCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 233018 | 0.71 | 0.811557 |
Target: 5'- aGCGCCA--GCGCGCCcagcacGCCCgCGcGCa -3' miRNA: 3'- cCGCGGUuuUGCGUGGa-----UGGGaGC-CG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 76563 | 0.71 | 0.802999 |
Target: 5'- uGGCGCgcuguggacuCGAAGCGCccACCUcGCCCggaGGCg -3' miRNA: 3'- -CCGCG----------GUUUUGCG--UGGA-UGGGag-CCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 196818 | 0.71 | 0.802999 |
Target: 5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3' miRNA: 3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 100840 | 0.71 | 0.794296 |
Target: 5'- gGGUGCC-AGACGUAg--ACUCUCGGCc -3' miRNA: 3'- -CCGCGGuUUUGCGUggaUGGGAGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 33122 | 0.71 | 0.785455 |
Target: 5'- cGGUGCUuauAACGCGCC-GCCg-CGGCu -3' miRNA: 3'- -CCGCGGuu-UUGCGUGGaUGGgaGCCG- -5' |
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30243 | 3' | -55.5 | NC_006273.1 | + | 208809 | 0.71 | 0.785455 |
Target: 5'- gGGCGCUguGGCGCACagguugaGCCCggCGGUg -3' miRNA: 3'- -CCGCGGuuUUGCGUGga-----UGGGa-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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