miRNA display CGI


Results 1 - 20 of 368 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 226984 1.15 0.002311
Target:  5'- cGGCGCCAAAACGCACCUACCCUCGGCg -3'
miRNA:   3'- -CCGCGGUUUUGCGUGGAUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 123474 0.81 0.288161
Target:  5'- gGGCGCCcuuGAGCugGCGCagGCCCUCGGCg -3'
miRNA:   3'- -CCGCGGu--UUUG--CGUGgaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 193166 0.81 0.322249
Target:  5'- cGGcCGCCGAAGCcCACgCUGCCCguUCGGCg -3'
miRNA:   3'- -CC-GCGGUUUUGcGUG-GAUGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 151360 0.8 0.367011
Target:  5'- uGGCGCCG--GCGCGCCUuCUCgCGGCu -3'
miRNA:   3'- -CCGCGGUuuUGCGUGGAuGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 48877 0.79 0.382852
Target:  5'- gGGCGCCAcagcucGCGCuACUUGCCCUagCGGCu -3'
miRNA:   3'- -CCGCGGUuu----UGCG-UGGAUGGGA--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 119612 0.79 0.399142
Target:  5'- gGGUGCCGAAGCGUACgaACCCUUGauucGCa -3'
miRNA:   3'- -CCGCGGUUUUGCGUGgaUGGGAGC----CG- -5'
30243 3' -55.5 NC_006273.1 + 102569 0.79 0.402453
Target:  5'- cGGCGUCGAGACagacggcgugauugaGCACCUGCgCCaCGGCg -3'
miRNA:   3'- -CCGCGGUUUUG---------------CGUGGAUG-GGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 145692 0.79 0.407452
Target:  5'- gGGCGCUAGcgUGgACCUACCUaUCGGCu -3'
miRNA:   3'- -CCGCGGUUuuGCgUGGAUGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 188465 0.78 0.441745
Target:  5'- aGGCGCgGAuAGCGCGCCUcGgCCUCGGg -3'
miRNA:   3'- -CCGCGgUU-UUGCGUGGA-UgGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 55306 0.78 0.450571
Target:  5'- cGCGCCAGAAagUGCGCCUGCCgcguaUCGGg -3'
miRNA:   3'- cCGCGGUUUU--GCGUGGAUGGg----AGCCg -5'
30243 3' -55.5 NC_006273.1 + 33402 0.78 0.459493
Target:  5'- aGGCGCUGGAcGCGCACC-GCCUcgggcgUCGGCg -3'
miRNA:   3'- -CCGCGGUUU-UGCGUGGaUGGG------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 39003 0.77 0.47214
Target:  5'- aGCGCCAGGuacaguccguccugcGCGCACagACCCUCGGg -3'
miRNA:   3'- cCGCGGUUU---------------UGCGUGgaUGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 233896 0.77 0.47214
Target:  5'- aGCGCCAGGuacaguccguccugcGCGCACagACCCUCGGg -3'
miRNA:   3'- cCGCGGUUU---------------UGCGUGgaUGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 234813 0.77 0.505433
Target:  5'- cGGCGCCAuaaAGGCGCuuagcCCUGuCCCgcacCGGCg -3'
miRNA:   3'- -CCGCGGU---UUUGCGu----GGAU-GGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 194875 0.77 0.505433
Target:  5'- cGGCGCCAuaaAGGCGCuuagcCCUGuCCCgcacCGGCg -3'
miRNA:   3'- -CCGCGGU---UUUGCGu----GGAU-GGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 32890 0.77 0.505433
Target:  5'- uGGUGCCGAuGACGCGCaacugACCCUgGGUc -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGga---UGGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 22253 0.77 0.505433
Target:  5'- gGGCGCCGGcgagcGACGCGgCUccGCCgUCGGUg -3'
miRNA:   3'- -CCGCGGUU-----UUGCGUgGA--UGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 10194 0.76 0.514861
Target:  5'- cGGUGUCAuGAUaGCACCaguucUGCCCUCGGUg -3'
miRNA:   3'- -CCGCGGUuUUG-CGUGG-----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 151730 0.76 0.52436
Target:  5'- gGGCGCCGcgucGCGCGCCUugCgCaCGGCc -3'
miRNA:   3'- -CCGCGGUuu--UGCGUGGAugG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 147896 0.76 0.533925
Target:  5'- cGCGCCAGcuACGCuGCgCUGgCCUCGGCc -3'
miRNA:   3'- cCGCGGUUu-UGCG-UG-GAUgGGAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.