miRNA display CGI


Results 21 - 40 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 168617 0.76 0.553234
Target:  5'- aGCGCCGAGcCGCGgCUGCCCgggUCGcGCa -3'
miRNA:   3'- cCGCGGUUUuGCGUgGAUGGG---AGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 70814 0.76 0.562967
Target:  5'- aGCGCCA--GCG-GCCUgGCCUUCGGCa -3'
miRNA:   3'- cCGCGGUuuUGCgUGGA-UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 141434 0.75 0.572746
Target:  5'- cGGCGCaugcgCAGGGCGCGCCU-CCCgCGGg -3'
miRNA:   3'- -CCGCG-----GUUUUGCGUGGAuGGGaGCCg -5'
30243 3' -55.5 NC_006273.1 + 33220 0.75 0.582564
Target:  5'- gGGC-CCGGuAGCGCACCgaggGCCCcggggCGGCg -3'
miRNA:   3'- -CCGcGGUU-UUGCGUGGa---UGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 129538 0.75 0.602294
Target:  5'- cGGCGCUgcgcCGCGCCg--CCUCGGCu -3'
miRNA:   3'- -CCGCGGuuuuGCGUGGaugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 104097 0.75 0.602294
Target:  5'- aGGCcaugGUCAGua-GCACCUgGCCCUCGGUg -3'
miRNA:   3'- -CCG----CGGUUuugCGUGGA-UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 71094 0.74 0.626075
Target:  5'- gGGCGCCGAcGCGCacACCUgcgaguaccugaucgACCgaCGGCg -3'
miRNA:   3'- -CCGCGGUUuUGCG--UGGA---------------UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 188574 0.74 0.632029
Target:  5'- cGGCGCCcAggUGCACgCUGaugUCCUCGGg -3'
miRNA:   3'- -CCGCGGuUuuGCGUG-GAU---GGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 37417 0.74 0.64195
Target:  5'- aGCGCCGGGGCGCGCC-GCUaCUUGGg -3'
miRNA:   3'- cCGCGGUUUUGCGUGGaUGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 133728 0.74 0.64195
Target:  5'- uGGCguugGCCGAguAGCGUGCCgucgUGCCUUCGGCc -3'
miRNA:   3'- -CCG----CGGUU--UUGCGUGG----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 227117 0.74 0.64195
Target:  5'- cGGCGUgGGuAUGCGCCgcUGCCCUacCGGCu -3'
miRNA:   3'- -CCGCGgUUuUGCGUGG--AUGGGA--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 43036 0.74 0.651863
Target:  5'- cGCGCCAcggccgcgcAACGCACCUcgaACuCCUCGaGCa -3'
miRNA:   3'- cCGCGGUu--------UUGCGUGGA---UG-GGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 149675 0.74 0.651863
Target:  5'- cGGCGUUAGGuggcuguugcuGCGCGCCgguggcgacugGCUCUCGGCc -3'
miRNA:   3'- -CCGCGGUUU-----------UGCGUGGa----------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 59728 0.74 0.651863
Target:  5'- cGGCcaauuccaCAAAACGCGCCgucUCCUCGGCc -3'
miRNA:   3'- -CCGcg------GUUUUGCGUGGau-GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 76627 0.74 0.651863
Target:  5'- cGGCGUCGAcGGCGCACUggcgcgACCCgaccCGGUa -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGGa-----UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 154926 0.74 0.661762
Target:  5'- aGCGgCAGuACGCcgccGCCUuuCCCUCGGCu -3'
miRNA:   3'- cCGCgGUUuUGCG----UGGAu-GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 178158 0.74 0.675581
Target:  5'- cGCGUCAagcguaacguuaaaaAAGCGC-CCUGCCCUacgGGCa -3'
miRNA:   3'- cCGCGGU---------------UUUGCGuGGAUGGGAg--CCG- -5'
30243 3' -55.5 NC_006273.1 + 61423 0.73 0.680502
Target:  5'- cGCGCCcGGcUGCGCCUcgaacucuaccagGCCCUCGGg -3'
miRNA:   3'- cCGCGGuUUuGCGUGGA-------------UGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 40908 0.73 0.681485
Target:  5'- cGGCGUCG--ACGCACCgucUGCgCUCGGg -3'
miRNA:   3'- -CCGCGGUuuUGCGUGG---AUGgGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 199688 0.73 0.681485
Target:  5'- gGGCacGCCuuuGCGUACCUGCCC--GGCg -3'
miRNA:   3'- -CCG--CGGuuuUGCGUGGAUGGGagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.