miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 220466 0.72 0.767394
Target:  5'- --gGCCGugGCGUACgaGCCCUCaGGCg -3'
miRNA:   3'- ccgCGGUuuUGCGUGgaUGGGAG-CCG- -5'
30243 3' -55.5 NC_006273.1 + 114220 0.72 0.776485
Target:  5'- cGCGCCGccuCGgAUCUACUCaUCGGCa -3'
miRNA:   3'- cCGCGGUuuuGCgUGGAUGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 164789 0.72 0.776485
Target:  5'- cGGCGCuCAGAcaaaacACGCgaGCCUGCUCgUCGGg -3'
miRNA:   3'- -CCGCG-GUUU------UGCG--UGGAUGGG-AGCCg -5'
30243 3' -55.5 NC_006273.1 + 81335 0.72 0.776485
Target:  5'- aGCGCCGAGA-GCACgUcaacGCCCUUGcGCa -3'
miRNA:   3'- cCGCGGUUUUgCGUGgA----UGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 230437 0.72 0.776485
Target:  5'- cGGCuuccCCAGAuCGCugCUGCUC-CGGCg -3'
miRNA:   3'- -CCGc---GGUUUuGCGugGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 131039 0.72 0.776485
Target:  5'- cGCGCUAccuggccGCGCGCCaGCCCaucccccucUCGGCg -3'
miRNA:   3'- cCGCGGUuu-----UGCGUGGaUGGG---------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198757 0.72 0.780088
Target:  5'- uGCGCCuacguaGAGGCGCACCgcgaggcgcaacugACCCUCaucuGGCc -3'
miRNA:   3'- cCGCGG------UUUUGCGUGGa-------------UGGGAG----CCG- -5'
30243 3' -55.5 NC_006273.1 + 197280 0.72 0.780088
Target:  5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3'
miRNA:   3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 2387 0.72 0.780088
Target:  5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3'
miRNA:   3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 93649 0.71 0.782778
Target:  5'- uGGCGCCGGcGCGC-CCUGCUgggacgacgcaauggCGGCg -3'
miRNA:   3'- -CCGCGGUUuUGCGuGGAUGGga-------------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 33122 0.71 0.785455
Target:  5'- cGGUGCUuauAACGCGCC-GCCg-CGGCu -3'
miRNA:   3'- -CCGCGGuu-UUGCGUGGaUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 208809 0.71 0.785455
Target:  5'- gGGCGCUguGGCGCACagguugaGCCCggCGGUg -3'
miRNA:   3'- -CCGCGGuuUUGCGUGga-----UGGGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 95028 0.71 0.785455
Target:  5'- cGGcCGCCAGu-CGUgACCggggguCCCUCGGCc -3'
miRNA:   3'- -CC-GCGGUUuuGCG-UGGau----GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 69408 0.71 0.785455
Target:  5'- uGGCGCUgcGAGACGaugGCCgACCCcUGGCa -3'
miRNA:   3'- -CCGCGG--UUUUGCg--UGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 87424 0.71 0.785455
Target:  5'- cGCGCCAAcacGGCGCuACgCUGCUCUaGGCc -3'
miRNA:   3'- cCGCGGUU---UUGCG-UG-GAUGGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 100840 0.71 0.794296
Target:  5'- gGGUGCC-AGACGUAg--ACUCUCGGCc -3'
miRNA:   3'- -CCGCGGuUUUGCGUggaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 42577 0.71 0.794296
Target:  5'- cGUGCCGAucACGCGCCgcaagugcGCUugCUCGGCa -3'
miRNA:   3'- cCGCGGUUu-UGCGUGGa-------UGG--GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 211224 0.71 0.802135
Target:  5'- aGGcCGCCGAGACGUuaGCCauccaagaaauggUACCgUUGGCc -3'
miRNA:   3'- -CC-GCGGUUUUGCG--UGG-------------AUGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 196818 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 76563 0.71 0.802999
Target:  5'- uGGCGCgcuguggacuCGAAGCGCccACCUcGCCCggaGGCg -3'
miRNA:   3'- -CCGCG----------GUUUUGCG--UGGA-UGGGag-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.