miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 196818 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 1926 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 149741 0.71 0.802999
Target:  5'- uGCGCa--AACGCGCCUACCugcagaagguCUCGGa -3'
miRNA:   3'- cCGCGguuUUGCGUGGAUGG----------GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 233018 0.71 0.811557
Target:  5'- aGCGCCA--GCGCGCCcagcacGCCCgCGcGCa -3'
miRNA:   3'- cCGCGGUuuUGCGUGGa-----UGGGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 213448 0.71 0.811557
Target:  5'- aGCGCCGccuAGCGCcguCUACCCgaugcCGGCg -3'
miRNA:   3'- cCGCGGUu--UUGCGug-GAUGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 205701 0.71 0.811557
Target:  5'- -cCGCUGuuGCGCGCCUggAgCCUCGGUu -3'
miRNA:   3'- ccGCGGUuuUGCGUGGA--UgGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 38125 0.71 0.811557
Target:  5'- aGCGCCA--GCGCGCCcagcacGCCCgCGcGCa -3'
miRNA:   3'- cCGCGGUuuUGCGUGGa-----UGGGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 163087 0.71 0.819962
Target:  5'- aGCGCCGcgcuGCGCGgCgGCCUcaUCGGCa -3'
miRNA:   3'- cCGCGGUuu--UGCGUgGaUGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 214883 0.7 0.828206
Target:  5'- cGGCacaaaGCCGcugcGGCGCACCUACCCUUc-- -3'
miRNA:   3'- -CCG-----CGGUu---UUGCGUGGAUGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 196552 0.7 0.828206
Target:  5'- cGCGCgc-GACGCugCUGCCUcagcCGGCg -3'
miRNA:   3'- cCGCGguuUUGCGugGAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 1659 0.7 0.828206
Target:  5'- cGCGCgc-GACGCugCUGCCUcagcCGGCg -3'
miRNA:   3'- cCGCGguuUUGCGugGAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 56252 0.7 0.828206
Target:  5'- cGCuaCAAcGCGCGCCUgACCCgUGGCu -3'
miRNA:   3'- cCGcgGUUuUGCGUGGA-UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 131867 0.7 0.835483
Target:  5'- cGGCgGCCGcaucGAcggcACGCACCUGgcgggcuUCUUCGGCa -3'
miRNA:   3'- -CCG-CGGU----UU----UGCGUGGAU-------GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 143489 0.7 0.836283
Target:  5'- cGGCGCaaauGAGCuacgGCGCCUGucUCCUgGGCg -3'
miRNA:   3'- -CCGCGgu--UUUG----CGUGGAU--GGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 591 0.7 0.836283
Target:  5'- uGGCGCCGcAAGCGCuccGCCgcUUCUgCGGCu -3'
miRNA:   3'- -CCGCGGU-UUUGCG---UGGauGGGA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 135181 0.7 0.836283
Target:  5'- -aCGCCAu-GgGUACCUACCgCUgCGGCg -3'
miRNA:   3'- ccGCGGUuuUgCGUGGAUGG-GA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 197364 0.7 0.836283
Target:  5'- cGCGCUggGACGCgcugcACCUGCaCC-CGcGCg -3'
miRNA:   3'- cCGCGGuuUUGCG-----UGGAUG-GGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 42907 0.7 0.836283
Target:  5'- cGCGCUuAGAGCGCGCgCUccACgaUCUCGGCa -3'
miRNA:   3'- cCGCGG-UUUUGCGUG-GA--UG--GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 120945 0.7 0.836283
Target:  5'- uGGCGCCGccgccgguGACGCGgggcguCUUACgCUCGGUg -3'
miRNA:   3'- -CCGCGGUu-------UUGCGU------GGAUGgGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 40529 0.7 0.836283
Target:  5'- uGGCGCCGcAAGCGCuccGCCgcUUCUgCGGCu -3'
miRNA:   3'- -CCGCGGU-UUUGCG---UGGauGGGA-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.