miRNA display CGI


Results 21 - 40 of 368 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 109874 0.66 0.971321
Target:  5'- cGUGCCGucugacgcaggAAGCGCuACCgAUCCUCaGCa -3'
miRNA:   3'- cCGCGGU-----------UUUGCG-UGGaUGGGAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 65705 0.66 0.971321
Target:  5'- cGGCGCUA--ACGCGgCaacgGCCa-CGGCg -3'
miRNA:   3'- -CCGCGGUuuUGCGUgGa---UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 102654 0.66 0.971321
Target:  5'- cGGCGUgAuGAUGCGCagccccaguUUGCCCUugcagCGGCa -3'
miRNA:   3'- -CCGCGgUuUUGCGUG---------GAUGGGA-----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 204793 0.66 0.971321
Target:  5'- cGGCGCCGGuGC-CGCCgg-UCUCGcGCa -3'
miRNA:   3'- -CCGCGGUUuUGcGUGGaugGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 153931 0.66 0.971321
Target:  5'- cGCGCUAucgucaGCAUCUgguGCCUUCGGg -3'
miRNA:   3'- cCGCGGUuuug--CGUGGA---UGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 190165 0.66 0.971045
Target:  5'- aGUGCUucAGCaGCAgcuucuuCUUGCCUUCGGCg -3'
miRNA:   3'- cCGCGGuuUUG-CGU-------GGAUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 92216 0.66 0.969923
Target:  5'- cGGUGCgAGcaguuggggaugcGGCGCGCCgUGCCCgucuccugaaagaCGGCc -3'
miRNA:   3'- -CCGCGgUU-------------UUGCGUGG-AUGGGa------------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 201055 0.66 0.969638
Target:  5'- cGGCaGCUAugcucgaugaccgagGAGCuGUACCUGCgCCUggaCGGCa -3'
miRNA:   3'- -CCG-CGGU---------------UUUG-CGUGGAUG-GGA---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 137789 0.66 0.969638
Target:  5'- cGGCGUCGucGACGCaucugucauuuACCUACCUuguaccaacugagcuUCGGa -3'
miRNA:   3'- -CCGCGGUu-UUGCG-----------UGGAUGGG---------------AGCCg -5'
30243 3' -55.5 NC_006273.1 + 170283 0.66 0.969351
Target:  5'- -aCGCCGAAGCccgugagcaccaucaGCACCUgauggagACCCUC-GCa -3'
miRNA:   3'- ccGCGGUUUUG---------------CGUGGA-------UGGGAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 83910 0.66 0.968478
Target:  5'- uGGCGCUggGcACGCuggACCccgUACCCgaGGCc -3'
miRNA:   3'- -CCGCGGuuU-UGCG---UGG---AUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 14359 0.66 0.968478
Target:  5'- -cCGCCGGAGCucccCGCgCUGCCUguggCGGCu -3'
miRNA:   3'- ccGCGGUUUUGc---GUG-GAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 140172 0.66 0.968478
Target:  5'- uGGgGuCCGAG--GCGCCgACCC-CGGCu -3'
miRNA:   3'- -CCgC-GGUUUugCGUGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 68014 0.66 0.968478
Target:  5'- cGGCGUCAugGGugGCGgaggaCUGCCggcaggugugggCUCGGCc -3'
miRNA:   3'- -CCGCGGU--UUugCGUg----GAUGG------------GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 18521 0.66 0.968478
Target:  5'- aGgGCCu--GCGCGCCUGCC---GGCc -3'
miRNA:   3'- cCgCGGuuuUGCGUGGAUGGgagCCG- -5'
30243 3' -55.5 NC_006273.1 + 24745 0.66 0.968478
Target:  5'- cGGCGCUAGGugucACGUguGCCUGCCa--GGa -3'
miRNA:   3'- -CCGCGGUUU----UGCG--UGGAUGGgagCCg -5'
30243 3' -55.5 NC_006273.1 + 67544 0.66 0.968478
Target:  5'- cGGCuCCAc-ACGCAUCUgcaagucccugGCCC-CGGCc -3'
miRNA:   3'- -CCGcGGUuuUGCGUGGA-----------UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 102110 0.66 0.968478
Target:  5'- uGCGcCCGAGACgGCGgC-AUCCUCGGg -3'
miRNA:   3'- cCGC-GGUUUUG-CGUgGaUGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 1854 0.66 0.968478
Target:  5'- cGGCGCCGcacccCGCGuCgCUGCUgaCGGCc -3'
miRNA:   3'- -CCGCGGUuuu--GCGU-G-GAUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 163325 0.66 0.968478
Target:  5'- -aCGCCGAGcuCGUACaCUGCUCgcucugCGGCa -3'
miRNA:   3'- ccGCGGUUUu-GCGUG-GAUGGGa-----GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.