miRNA display CGI


Results 41 - 60 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 14359 0.66 0.968478
Target:  5'- -cCGCCGGAGCucccCGCgCUGCCUguggCGGCu -3'
miRNA:   3'- ccGCGGUUUUGc---GUG-GAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 25972 0.66 0.968478
Target:  5'- cGcCGCUGGAACGCGC--GCUUUUGGCg -3'
miRNA:   3'- cC-GCGGUUUUGCGUGgaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 1800 0.66 0.968478
Target:  5'- gGGcCGCCAAccuguCGuCACCuUACUgUUGGCg -3'
miRNA:   3'- -CC-GCGGUUuu---GC-GUGG-AUGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 163325 0.66 0.968478
Target:  5'- -aCGCCGAGcuCGUACaCUGCUCgcucugCGGCa -3'
miRNA:   3'- ccGCGGUUUu-GCGUG-GAUGGGa-----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 67544 0.66 0.968478
Target:  5'- cGGCuCCAc-ACGCAUCUgcaagucccugGCCC-CGGCc -3'
miRNA:   3'- -CCGcGGUuuUGCGUGGA-----------UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 99921 0.66 0.968478
Target:  5'- aGGC-CCGucuuGACGCAgaCggaGCCCUCGaGCg -3'
miRNA:   3'- -CCGcGGUu---UUGCGUg-Ga--UGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 171355 0.66 0.968478
Target:  5'- cGCGCCAccaAAAC-CGCCgcGCCCauggUGGCu -3'
miRNA:   3'- cCGCGGU---UUUGcGUGGa-UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 140172 0.66 0.968478
Target:  5'- uGGgGuCCGAG--GCGCCgACCC-CGGCu -3'
miRNA:   3'- -CCgC-GGUUUugCGUGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 18521 0.66 0.968478
Target:  5'- aGgGCCu--GCGCGCCUGCC---GGCc -3'
miRNA:   3'- cCgCGGuuuUGCGUGGAUGGgagCCG- -5'
30243 3' -55.5 NC_006273.1 + 67959 0.66 0.966679
Target:  5'- -cCGCCgAGAGCGCGCCcGCCacuguggaagucuguCUgGGCg -3'
miRNA:   3'- ccGCGG-UUUUGCGUGGaUGG---------------GAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 104334 0.66 0.965753
Target:  5'- cGGCGCa-----GCugCUGCCCcguaaagucaaauggCGGCg -3'
miRNA:   3'- -CCGCGguuuugCGugGAUGGGa--------------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 196794 0.66 0.96544
Target:  5'- cGGCacaGCCGcAGGCGC-UCUGCCagUUGGCg -3'
miRNA:   3'- -CCG---CGGU-UUUGCGuGGAUGGg-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 107268 0.66 0.96544
Target:  5'- cGCGCuCAAGACGCugUgccACCCggugCuGCa -3'
miRNA:   3'- cCGCG-GUUUUGCGugGa--UGGGa---GcCG- -5'
30243 3' -55.5 NC_006273.1 + 155084 0.66 0.96544
Target:  5'- gGGCgGCCAGAGCGUGCCggUAUCUcaaCGGa -3'
miRNA:   3'- -CCG-CGGUUUUGCGUGG--AUGGGa--GCCg -5'
30243 3' -55.5 NC_006273.1 + 51932 0.66 0.96544
Target:  5'- cGGaCGUgGGAGCGCACCU-CCaC-CGGg -3'
miRNA:   3'- -CC-GCGgUUUUGCGUGGAuGG-GaGCCg -5'
30243 3' -55.5 NC_006273.1 + 189836 0.66 0.96544
Target:  5'- cGGCcacGCCGGGugGCAUCUGCggcaUGGCg -3'
miRNA:   3'- -CCG---CGGUUUugCGUGGAUGgga-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 40590 0.66 0.96544
Target:  5'- aGGUuUCAAggaaggaacaccGACGCGgCUGCCC-CGGCc -3'
miRNA:   3'- -CCGcGGUU------------UUGCGUgGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 195181 0.66 0.96544
Target:  5'- gGGCGCCAAAACGCcgucggacGCCgugcagaacAUCCUCc-- -3'
miRNA:   3'- -CCGCGGUUUUGCG--------UGGa--------UGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 14034 0.66 0.96544
Target:  5'- aGCGCCG--AUGUACCUGCagCUCGa- -3'
miRNA:   3'- cCGCGGUuuUGCGUGGAUGg-GAGCcg -5'
30243 3' -55.5 NC_006273.1 + 21696 0.66 0.96544
Target:  5'- uGUGCCAGc-CGuCGCCgcagGCCUuugUCGGCg -3'
miRNA:   3'- cCGCGGUUuuGC-GUGGa---UGGG---AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.