miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 14034 0.66 0.96544
Target:  5'- aGCGCCG--AUGUACCUGCagCUCGa- -3'
miRNA:   3'- cCGCGGUuuUGCGUGGAUGg-GAGCcg -5'
30243 3' -55.5 NC_006273.1 + 196794 0.66 0.96544
Target:  5'- cGGCacaGCCGcAGGCGC-UCUGCCagUUGGCg -3'
miRNA:   3'- -CCG---CGGU-UUUGCGuGGAUGGg-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 51932 0.66 0.96544
Target:  5'- cGGaCGUgGGAGCGCACCU-CCaC-CGGg -3'
miRNA:   3'- -CC-GCGgUUUUGCGUGGAuGG-GaGCCg -5'
30243 3' -55.5 NC_006273.1 + 195181 0.66 0.96544
Target:  5'- gGGCGCCAAAACGCcgucggacGCCgugcagaacAUCCUCc-- -3'
miRNA:   3'- -CCGCGGUUUUGCG--------UGGa--------UGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 205623 0.66 0.96544
Target:  5'- cGCGUCGGGcuGCGCGCCgucgagACCCU--GCa -3'
miRNA:   3'- cCGCGGUUU--UGCGUGGa-----UGGGAgcCG- -5'
30243 3' -55.5 NC_006273.1 + 143315 0.66 0.965126
Target:  5'- cGGCGCUggGuaACGUGCUgggcuuuUGCCUcaugCGGCu -3'
miRNA:   3'- -CCGCGGuuU--UGCGUGG-------AUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 102149 0.66 0.963522
Target:  5'- uGGCGCCGucGC-CACCgUacaggugauaggcgaGCaCCUCGGUg -3'
miRNA:   3'- -CCGCGGUuuUGcGUGG-A---------------UG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 36019 0.66 0.962203
Target:  5'- cGCGCC-AGAUGCugCUGaaCUUGGg -3'
miRNA:   3'- cCGCGGuUUUGCGugGAUggGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 41574 0.66 0.962203
Target:  5'- uGCGCUGucgccgcCGCGCCaUAgccUCCUCGGCu -3'
miRNA:   3'- cCGCGGUuuu----GCGUGG-AU---GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 133628 0.66 0.962203
Target:  5'- -cCGCCc-GACGCGCCcaUGCCgC-CGGCg -3'
miRNA:   3'- ccGCGGuuUUGCGUGG--AUGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 138748 0.66 0.962203
Target:  5'- gGGCGUgAGguucuGGCuGCACCcGCCCgaucccucgUCGGCu -3'
miRNA:   3'- -CCGCGgUU-----UUG-CGUGGaUGGG---------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 57887 0.66 0.962203
Target:  5'- uGGCGCCAc-ACGC-CCggAgCCUCGaGUu -3'
miRNA:   3'- -CCGCGGUuuUGCGuGGa-UgGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 108847 0.66 0.962203
Target:  5'- cGGCuuCCAAGACG-ACCUagucucccGCaCCUUGGCu -3'
miRNA:   3'- -CCGc-GGUUUUGCgUGGA--------UG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 21668 0.66 0.962203
Target:  5'- cGGCGCUGGuggccGACGUgcacgACCUgcGCCaCUCGGa -3'
miRNA:   3'- -CCGCGGUU-----UUGCG-----UGGA--UGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 232257 0.66 0.962203
Target:  5'- --aGCCA--AUGCaAUCUugUCUCGGCa -3'
miRNA:   3'- ccgCGGUuuUGCG-UGGAugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 40728 0.66 0.962203
Target:  5'- gGGCGaCAAAACGgaCGCCgagGCUgaCGGCu -3'
miRNA:   3'- -CCGCgGUUUUGC--GUGGa--UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 130432 0.66 0.962203
Target:  5'- cGCGUCAugauGGCGCuucGCUUGCCCgagcagaCGGUg -3'
miRNA:   3'- cCGCGGUu---UUGCG---UGGAUGGGa------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 218289 0.67 0.960162
Target:  5'- cGGCGUuccgCGAAgucgccgcggaccacGCGCGCCUGCCagaUGGUa -3'
miRNA:   3'- -CCGCG----GUUU---------------UGCGUGGAUGGga-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 90844 0.67 0.960162
Target:  5'- cGCGCCuccacaAAAGCGCugCgcgcauccagcgagACCUcgUCGGCu -3'
miRNA:   3'- cCGCGG------UUUUGCGugGa-------------UGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 197573 0.67 0.960162
Target:  5'- cGGaGCCAucuACGCGCCUGUCagggcgaugagacaUCGGCg -3'
miRNA:   3'- -CCgCGGUuu-UGCGUGGAUGGg-------------AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.