miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 591 0.7 0.836283
Target:  5'- uGGCGCCGcAAGCGCuccGCCgcUUCUgCGGCu -3'
miRNA:   3'- -CCGCGGU-UUUGCG---UGGauGGGA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 776 0.67 0.955109
Target:  5'- cGGCGCUuuguGCGCA-CUGCCgUugcgUGGCg -3'
miRNA:   3'- -CCGCGGuuu-UGCGUgGAUGGgA----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 1033 0.68 0.933595
Target:  5'- uGCGCCuacGGCGaCGCCggGCCa-CGGCg -3'
miRNA:   3'- cCGCGGuu-UUGC-GUGGa-UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 1278 0.69 0.887595
Target:  5'- -aCGCgGGcACGCugCUGCCgCUCGGa -3'
miRNA:   3'- ccGCGgUUuUGCGugGAUGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 1659 0.7 0.828206
Target:  5'- cGCGCgc-GACGCugCUGCCUcagcCGGCg -3'
miRNA:   3'- cCGCGguuUUGCGugGAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 1800 0.66 0.968478
Target:  5'- gGGcCGCCAAccuguCGuCACCuUACUgUUGGCg -3'
miRNA:   3'- -CC-GCGGUUuu---GC-GUGG-AUGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 1854 0.66 0.968478
Target:  5'- cGGCGCCGcacccCGCGuCgCUGCUgaCGGCc -3'
miRNA:   3'- -CCGCGGUuuu--GCGU-G-GAUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 1926 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 2024 0.68 0.918013
Target:  5'- aGGcCGCCGgcggGGACGCGCCgUGCgCgaUGGCa -3'
miRNA:   3'- -CC-GCGGU----UUUGCGUGG-AUG-GgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 2240 0.67 0.95876
Target:  5'- cGGCGUCGGGgaccgugccGCGCGCCaUGCUggUGGUg -3'
miRNA:   3'- -CCGCGGUUU---------UGCGUGG-AUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 2387 0.72 0.780088
Target:  5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3'
miRNA:   3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 2471 0.7 0.836283
Target:  5'- cGCGCUggGACGCgcugcACCUGCaCC-CGcGCg -3'
miRNA:   3'- cCGCGGuuUUGCG-----UGGAUG-GGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 4939 0.68 0.923431
Target:  5'- cGCcCCGAGGCGCugCUcugaagccaaguGCCgaCGGCg -3'
miRNA:   3'- cCGcGGUUUUGCGugGA------------UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 10194 0.76 0.514861
Target:  5'- cGGUGUCAuGAUaGCACCaguucUGCCCUCGGUg -3'
miRNA:   3'- -CCGCGGUuUUG-CGUGG-----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 14034 0.66 0.96544
Target:  5'- aGCGCCG--AUGUACCUGCagCUCGa- -3'
miRNA:   3'- cCGCGGUuuUGCGUGGAUGg-GAGCcg -5'
30243 3' -55.5 NC_006273.1 + 14359 0.66 0.968478
Target:  5'- -cCGCCGGAGCucccCGCgCUGCCUguggCGGCu -3'
miRNA:   3'- ccGCGGUUUUGc---GUG-GAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 16269 0.69 0.906505
Target:  5'- gGGUGgCGGuACGCGCCUcuacaucuacgaACCCUC-GCa -3'
miRNA:   3'- -CCGCgGUUuUGCGUGGA------------UGGGAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 16401 0.69 0.887595
Target:  5'- -aCGCCuuuggaaaacAAcACGCACCUGgCCUUGGUa -3'
miRNA:   3'- ccGCGG----------UUuUGCGUGGAUgGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 16665 0.67 0.947163
Target:  5'- gGGCGCCGu-GgGCuCCUACCgCgcCGGUg -3'
miRNA:   3'- -CCGCGGUuuUgCGuGGAUGG-Ga-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 18521 0.66 0.968478
Target:  5'- aGgGCCu--GCGCGCCUGCC---GGCc -3'
miRNA:   3'- cCgCGGuuuUGCGUGGAUGGgagCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.