miRNA display CGI


Results 21 - 40 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 20547 0.68 0.917458
Target:  5'- aGGCGCaGGAggcuaacGCGCugCUGCUCUCccgcauggaGGCu -3'
miRNA:   3'- -CCGCGgUUU-------UGCGugGAUGGGAG---------CCG- -5'
30243 3' -55.5 NC_006273.1 + 20602 0.69 0.906505
Target:  5'- cGGCgGCCGAAGCGCAagaacuggcgaUCaUACCgC-CGGCa -3'
miRNA:   3'- -CCG-CGGUUUUGCGU-----------GG-AUGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 21668 0.66 0.962203
Target:  5'- cGGCGCUGGuggccGACGUgcacgACCUgcGCCaCUCGGa -3'
miRNA:   3'- -CCGCGGUU-----UUGCG-----UGGA--UGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 21696 0.66 0.96544
Target:  5'- uGUGCCAGc-CGuCGCCgcagGCCUuugUCGGCg -3'
miRNA:   3'- cCGCGGUUuuGC-GUGGa---UGGG---AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 21849 0.69 0.873924
Target:  5'- cGGCGCUggGACuuugGCugCUGCgggCCgCGGCc -3'
miRNA:   3'- -CCGCGGuuUUG----CGugGAUG---GGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 22253 0.77 0.505433
Target:  5'- gGGCGCCGGcgagcGACGCGgCUccGCCgUCGGUg -3'
miRNA:   3'- -CCGCGGUU-----UUGCGUgGA--UGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 22322 0.67 0.955109
Target:  5'- cGGCGCCAacGAACGCcgcgacuCCga-CgUCGGUc -3'
miRNA:   3'- -CCGCGGU--UUUGCGu------GGaugGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 23336 0.67 0.95876
Target:  5'- gGGCGCCcccACcC-CCgcgACCCUCGcGCg -3'
miRNA:   3'- -CCGCGGuuuUGcGuGGa--UGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 24586 0.66 0.96544
Target:  5'- gGGCGcCCGAggUGCuccuCCUgguGCCUgUGGCc -3'
miRNA:   3'- -CCGC-GGUUuuGCGu---GGA---UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 24745 0.66 0.968478
Target:  5'- cGGCGCUAGGugucACGUguGCCUGCCa--GGa -3'
miRNA:   3'- -CCGCGGUUU----UGCG--UGGAUGGgagCCg -5'
30243 3' -55.5 NC_006273.1 + 25972 0.66 0.968478
Target:  5'- cGcCGCUGGAACGCGC--GCUUUUGGCg -3'
miRNA:   3'- cC-GCGGUUUUGCGUGgaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 29831 0.66 0.973974
Target:  5'- cGGCaGCCAcggaggAGACGagagaACCUACCUacuucacgugCGGCu -3'
miRNA:   3'- -CCG-CGGU------UUUGCg----UGGAUGGGa---------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 31485 0.67 0.93834
Target:  5'- cGCGC---GGCGCGCuCUAUCUcuaUCGGCa -3'
miRNA:   3'- cCGCGguuUUGCGUG-GAUGGG---AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 32054 0.66 0.973974
Target:  5'- uGGCGCgGuugcAAGCGCA---GCCCUCGaGUc -3'
miRNA:   3'- -CCGCGgU----UUUGCGUggaUGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 32685 0.68 0.91237
Target:  5'- cGGuUGCCGuGACGCAgUCUGCCCUgCGcaGCg -3'
miRNA:   3'- -CC-GCGGUuUUGCGU-GGAUGGGA-GC--CG- -5'
30243 3' -55.5 NC_006273.1 + 32890 0.77 0.505433
Target:  5'- uGGUGCCGAuGACGCGCaacugACCCUgGGUc -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGga---UGGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 33122 0.71 0.785455
Target:  5'- cGGUGCUuauAACGCGCC-GCCg-CGGCu -3'
miRNA:   3'- -CCGCGGuu-UUGCGUGGaUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 33220 0.75 0.582564
Target:  5'- gGGC-CCGGuAGCGCACCgaggGCCCcggggCGGCg -3'
miRNA:   3'- -CCGcGGUU-UUGCGUGGa---UGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 33402 0.78 0.459493
Target:  5'- aGGCGCUGGAcGCGCACC-GCCUcgggcgUCGGCg -3'
miRNA:   3'- -CCGCGGUUU-UGCGUGGaUGGG------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 33986 0.7 0.85944
Target:  5'- aGGUGUCGAuuGCGCuCCaGCCucagCUCGGCg -3'
miRNA:   3'- -CCGCGGUUu-UGCGuGGaUGG----GAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.