miRNA display CGI


Results 41 - 60 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 34305 0.69 0.906505
Target:  5'- gGGUGCCGuccAGGCGCAgguaCaGCuCCUCGGUc -3'
miRNA:   3'- -CCGCGGU---UUUGCGUg---GaUG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 36019 0.66 0.962203
Target:  5'- cGCGCC-AGAUGCugCUGaaCUUGGg -3'
miRNA:   3'- cCGCGGuUUUGCGugGAUggGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 36768 0.67 0.95876
Target:  5'- gGGUgGCCuGAGCaCGCCgagGCCCaguggCGGCa -3'
miRNA:   3'- -CCG-CGGuUUUGcGUGGa--UGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 36820 0.68 0.928626
Target:  5'- cGgGUCGcAGCGgAUCaUGCCCUUGGCa -3'
miRNA:   3'- cCgCGGUuUUGCgUGG-AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 36912 0.67 0.942862
Target:  5'- cGGCGCCGuacGCGuCACgaACaCCUgguacCGGCa -3'
miRNA:   3'- -CCGCGGUuu-UGC-GUGgaUG-GGA-----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 37083 0.67 0.951244
Target:  5'- gGGCcaGCCcagcGAcACGCACgaGCCCUCGaaGCg -3'
miRNA:   3'- -CCG--CGG----UUuUGCGUGgaUGGGAGC--CG- -5'
30243 3' -55.5 NC_006273.1 + 37162 0.67 0.95876
Target:  5'- aGGUcgGCCAAGuCGCGCgUGCaaaagaCCUCGGg -3'
miRNA:   3'- -CCG--CGGUUUuGCGUGgAUG------GGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 37216 0.69 0.880863
Target:  5'- cGCgGCCG--ACGCGCgUGCCCa-GGCa -3'
miRNA:   3'- cCG-CGGUuuUGCGUGgAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 37417 0.74 0.64195
Target:  5'- aGCGCCGGGGCGCGCC-GCUaCUUGGg -3'
miRNA:   3'- cCGCGGUUUUGCGUGGaUGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 38125 0.71 0.811557
Target:  5'- aGCGCCA--GCGCGCCcagcacGCCCgCGcGCa -3'
miRNA:   3'- cCGCGGUuuUGCGUGGa-----UGGGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 38186 0.68 0.933595
Target:  5'- gGGaCGCCGAGccCGCGCCgcgGCCgCUcauccggagaCGGCg -3'
miRNA:   3'- -CC-GCGGUUUu-GCGUGGa--UGG-GA----------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 38316 0.67 0.955109
Target:  5'- cGGCGCCGc--CGCugCUGCCgCUgCcGCc -3'
miRNA:   3'- -CCGCGGUuuuGCGugGAUGG-GA-GcCG- -5'
30243 3' -55.5 NC_006273.1 + 38620 0.68 0.918013
Target:  5'- aGGUGCCG--ACGCACg-GCCgUCaGCa -3'
miRNA:   3'- -CCGCGGUuuUGCGUGgaUGGgAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 38683 0.67 0.93834
Target:  5'- uGCGCCAGcuccugccACGCGCCcagcaGCaCCaUCGGCu -3'
miRNA:   3'- cCGCGGUUu-------UGCGUGGa----UG-GG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 38773 0.68 0.922366
Target:  5'- cGGCGCagcucccguccGAGCGCcgucGCCU--CCUCGGCg -3'
miRNA:   3'- -CCGCGgu---------UUUGCG----UGGAugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 39003 0.77 0.47214
Target:  5'- aGCGCCAGGuacaguccguccugcGCGCACagACCCUCGGg -3'
miRNA:   3'- cCGCGGUUU---------------UGCGUGgaUGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 40357 0.68 0.91237
Target:  5'- cGGCGUgauugCAAAGcCGCGCUcGCCCcCGGUu -3'
miRNA:   3'- -CCGCG-----GUUUU-GCGUGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 40529 0.7 0.836283
Target:  5'- uGGCGCCGcAAGCGCuccGCCgcUUCUgCGGCu -3'
miRNA:   3'- -CCGCGGU-UUUGCG---UGGauGGGA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 40590 0.66 0.96544
Target:  5'- aGGUuUCAAggaaggaacaccGACGCGgCUGCCC-CGGCc -3'
miRNA:   3'- -CCGcGGUU------------UUGCGUgGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 40714 0.67 0.955109
Target:  5'- cGGCGCUuuguGCGCA-CUGCCgUugcgUGGCg -3'
miRNA:   3'- -CCGCGGuuu-UGCGUgGAUGGgA----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.