miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 40728 0.66 0.962203
Target:  5'- gGGCGaCAAAACGgaCGCCgagGCUgaCGGCu -3'
miRNA:   3'- -CCGCgGUUUUGC--GUGGa--UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 40908 0.73 0.681485
Target:  5'- cGGCGUCG--ACGCACCgucUGCgCUCGGg -3'
miRNA:   3'- -CCGCGGUuuUGCGUGG---AUGgGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 40946 0.68 0.923431
Target:  5'- cGGCGUCGcGACuCGCUUGCCCagcacCGGUu -3'
miRNA:   3'- -CCGCGGUuUUGcGUGGAUGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 41218 0.67 0.93834
Target:  5'- cGGCGucCCGAGACGCugUUugugucACCg-CGGCg -3'
miRNA:   3'- -CCGC--GGUUUUGCGugGA------UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 41533 0.66 0.973974
Target:  5'- cGGCGCCAgcagGAACGUua--ACUC-CGGCg -3'
miRNA:   3'- -CCGCGGU----UUUGCGuggaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 41574 0.66 0.962203
Target:  5'- uGCGCUGucgccgcCGCGCCaUAgccUCCUCGGCu -3'
miRNA:   3'- cCGCGGUuuu----GCGUGG-AU---GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 42577 0.71 0.794296
Target:  5'- cGUGCCGAucACGCGCCgcaagugcGCUugCUCGGCa -3'
miRNA:   3'- cCGCGGUUu-UGCGUGGa-------UGG--GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 42872 0.68 0.933595
Target:  5'- aGCGUCuc-GCGCACCgACaUCUUGGCc -3'
miRNA:   3'- cCGCGGuuuUGCGUGGaUG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 42907 0.7 0.836283
Target:  5'- cGCGCUuAGAGCGCGCgCUccACgaUCUCGGCa -3'
miRNA:   3'- cCGCGG-UUUUGCGUG-GA--UG--GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 43036 0.74 0.651863
Target:  5'- cGCGCCAcggccgcgcAACGCACCUcgaACuCCUCGaGCa -3'
miRNA:   3'- cCGCGGUu--------UUGCGUGGA---UG-GGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 44803 0.69 0.887595
Target:  5'- gGGCGCCG--GCGgACgUGa-CUCGGCa -3'
miRNA:   3'- -CCGCGGUuuUGCgUGgAUggGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 44913 0.68 0.928626
Target:  5'- cGCGCCAcAACGCcguCCgGCgcaacuucugUCUCGGCa -3'
miRNA:   3'- cCGCGGUuUUGCGu--GGaUG----------GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 45210 0.67 0.936469
Target:  5'- cGCGCCGAAggcaagaagaagcuGCugcugaaGCACUUGCCCgugccgccCGGCg -3'
miRNA:   3'- cCGCGGUUU--------------UG-------CGUGGAUGGGa-------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 46317 0.67 0.95876
Target:  5'- gGGCGCaaGAAGCGgcCGCCUACgCCgcCGGUc -3'
miRNA:   3'- -CCGCGg-UUUUGC--GUGGAUG-GGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 47216 0.7 0.85944
Target:  5'- cGGCgaGCCAuGGAUGUGCCcgACCCggaacUCGGCg -3'
miRNA:   3'- -CCG--CGGU-UUUGCGUGGa-UGGG-----AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 47341 0.67 0.955109
Target:  5'- cGCGCCGccGGCGCugUcaucGCCCgaaacCGGCg -3'
miRNA:   3'- cCGCGGUu-UUGCGugGa---UGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 47748 0.66 0.971321
Target:  5'- gGGCGCCucucggcAGACGgGCCUgacACCCaaGcGCu -3'
miRNA:   3'- -CCGCGGu------UUUGCgUGGA---UGGGagC-CG- -5'
30243 3' -55.5 NC_006273.1 + 47821 0.73 0.720406
Target:  5'- aGCGCCGGuucGCGgACCUgucgucgcugGgCCUCGGCg -3'
miRNA:   3'- cCGCGGUUu--UGCgUGGA----------UgGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 48597 0.68 0.93552
Target:  5'- cGGCGCCGGGAauaaugugcCGUcgaccgacgucgcacACCUugaaacGCCgUCGGCg -3'
miRNA:   3'- -CCGCGGUUUU---------GCG---------------UGGA------UGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 48877 0.79 0.382852
Target:  5'- gGGCGCCAcagcucGCGCuACUUGCCCUagCGGCu -3'
miRNA:   3'- -CCGCGGUuu----UGCG-UGGAUGGGA--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.