miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 49830 0.69 0.908877
Target:  5'- cGCGCuguaCAAAACGCGCUacgccacagccacgACUCUUGGCa -3'
miRNA:   3'- cCGCG----GUUUUGCGUGGa-------------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 51660 0.7 0.851906
Target:  5'- uGCGCCGGAGCGUgagaagGCUgaGCCC-CGGUg -3'
miRNA:   3'- cCGCGGUUUUGCG------UGGa-UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 51932 0.66 0.96544
Target:  5'- cGGaCGUgGGAGCGCACCU-CCaC-CGGg -3'
miRNA:   3'- -CC-GCGgUUUUGCGUGGAuGG-GaGCCg -5'
30243 3' -55.5 NC_006273.1 + 51993 0.72 0.758189
Target:  5'- cGUGCCAGAACuGCGCC-AUgCUgGGCg -3'
miRNA:   3'- cCGCGGUUUUG-CGUGGaUGgGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 52621 0.68 0.91237
Target:  5'- aGGCuuCuc-GCGCAaguCCUgagagGCCCUCGGCg -3'
miRNA:   3'- -CCGcgGuuuUGCGU---GGA-----UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 55306 0.78 0.450571
Target:  5'- cGCGCCAGAAagUGCGCCUGCCgcguaUCGGg -3'
miRNA:   3'- cCGCGGUUUU--GCGUGGAUGGg----AGCCg -5'
30243 3' -55.5 NC_006273.1 + 56252 0.7 0.828206
Target:  5'- cGCuaCAAcGCGCGCCUgACCCgUGGCu -3'
miRNA:   3'- cCGcgGUUuUGCGUGGA-UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 56407 0.69 0.880863
Target:  5'- cGCGCCGu-GCGCACgUuCCCa-GGCa -3'
miRNA:   3'- cCGCGGUuuUGCGUGgAuGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 57887 0.66 0.962203
Target:  5'- uGGCGCCAc-ACGC-CCggAgCCUCGaGUu -3'
miRNA:   3'- -CCGCGGUuuUGCGuGGa-UgGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 58251 0.67 0.942862
Target:  5'- cGGCGUCAcgccccacAGAUGCGCC-ACCUcgucgUCGGg -3'
miRNA:   3'- -CCGCGGU--------UUUGCGUGGaUGGG-----AGCCg -5'
30243 3' -55.5 NC_006273.1 + 58653 0.68 0.918013
Target:  5'- cGCGUCcAAGCGCGCgUUGCCCcaaaccaccgccUCGGUc -3'
miRNA:   3'- cCGCGGuUUUGCGUG-GAUGGG------------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 59728 0.74 0.651863
Target:  5'- cGGCcaauuccaCAAAACGCGCCgucUCCUCGGCc -3'
miRNA:   3'- -CCGcg------GUUUUGCGUGGau-GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 60003 0.68 0.9229
Target:  5'- cGCGCCAcAGCGCGuuCCUGucggacggcagcuCCCgcgcCGGCu -3'
miRNA:   3'- cCGCGGUuUUGCGU--GGAU-------------GGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 61423 0.73 0.680502
Target:  5'- cGCGCCcGGcUGCGCCUcgaacucuaccagGCCCUCGGg -3'
miRNA:   3'- cCGCGGuUUuGCGUGGA-------------UGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 61472 0.69 0.887595
Target:  5'- cGCGCCGuga-GCGCCUGgUgaUCGGCg -3'
miRNA:   3'- cCGCGGUuuugCGUGGAUgGg-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 61751 0.7 0.866056
Target:  5'- aGCGCCGu-GCGCGCCUucgugggugcguuGCCgagCUCGGg -3'
miRNA:   3'- cCGCGGUuuUGCGUGGA-------------UGG---GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 63095 0.67 0.955109
Target:  5'- gGGUGCCAcggaggcgGAGCGCGagUACCUguaUCGGg -3'
miRNA:   3'- -CCGCGGU--------UUUGCGUggAUGGG---AGCCg -5'
30243 3' -55.5 NC_006273.1 + 63757 0.68 0.923431
Target:  5'- uGGCGCguGgccgGGCGCGCCU-CUCggaggaCGGCg -3'
miRNA:   3'- -CCGCGguU----UUGCGUGGAuGGGa-----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 64288 0.67 0.946743
Target:  5'- uGGCGCCuu-ACGCGaguUCUuggaggcGCCCugggaaUCGGCg -3'
miRNA:   3'- -CCGCGGuuuUGCGU---GGA-------UGGG------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 64742 0.67 0.940176
Target:  5'- cGCgGCUAGAGCGCGaguugcaaaagaagCUGCCCgcCGGCg -3'
miRNA:   3'- cCG-CGGUUUUGCGUg-------------GAUGGGa-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.