miRNA display CGI


Results 101 - 120 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 65705 0.66 0.971321
Target:  5'- cGGCGCUA--ACGCGgCaacgGCCa-CGGCg -3'
miRNA:   3'- -CCGCGGUuuUGCGUgGa---UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 65836 0.7 0.851906
Target:  5'- cGGCGCagCAGGcgguACGCGCCUAUCUg-GGCc -3'
miRNA:   3'- -CCGCG--GUUU----UGCGUGGAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 67544 0.66 0.968478
Target:  5'- cGGCuCCAc-ACGCAUCUgcaagucccugGCCC-CGGCc -3'
miRNA:   3'- -CCGcGGUuuUGCGUGGA-----------UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 67959 0.66 0.966679
Target:  5'- -cCGCCgAGAGCGCGCCcGCCacuguggaagucuguCUgGGCg -3'
miRNA:   3'- ccGCGG-UUUUGCGUGGaUGG---------------GAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 68014 0.66 0.968478
Target:  5'- cGGCGUCAugGGugGCGgaggaCUGCCggcaggugugggCUCGGCc -3'
miRNA:   3'- -CCGCGGU--UUugCGUg----GAUGG------------GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 69408 0.71 0.785455
Target:  5'- uGGCGCUgcGAGACGaugGCCgACCCcUGGCa -3'
miRNA:   3'- -CCGCGG--UUUUGCg--UGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 70163 0.66 0.96544
Target:  5'- -aCGCCGAG----ACCUACgCCUCGGUg -3'
miRNA:   3'- ccGCGGUUUugcgUGGAUG-GGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 70814 0.76 0.562967
Target:  5'- aGCGCCA--GCG-GCCUgGCCUUCGGCa -3'
miRNA:   3'- cCGCGGUuuUGCgUGGA-UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 71094 0.74 0.626075
Target:  5'- gGGCGCCGAcGCGCacACCUgcgaguaccugaucgACCgaCGGCg -3'
miRNA:   3'- -CCGCGGUUuUGCG--UGGA---------------UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 72349 0.69 0.887595
Target:  5'- gGGCuCUAcguGAUGCGCCUGCUgUcCGGCg -3'
miRNA:   3'- -CCGcGGUu--UUGCGUGGAUGGgA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 72438 0.66 0.96544
Target:  5'- cGCGCuCAAuggguagaaguAACGCACCgucggUGCCggCGGCc -3'
miRNA:   3'- cCGCG-GUU-----------UUGCGUGG-----AUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 72958 0.73 0.720406
Target:  5'- aGCGCCGucAC-CGCCUcCCgCUCGGCc -3'
miRNA:   3'- cCGCGGUuuUGcGUGGAuGG-GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 73074 0.7 0.851906
Target:  5'- uGCGCCGuucuucguGACGCuguuCCUGCCUUCGcCg -3'
miRNA:   3'- cCGCGGUu-------UUGCGu---GGAUGGGAGCcG- -5'
30243 3' -55.5 NC_006273.1 + 73750 0.67 0.942862
Target:  5'- cGGCgGCCGAGGCccggcagcgGCGCC-GCCagCGGCg -3'
miRNA:   3'- -CCG-CGGUUUUG---------CGUGGaUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 76521 0.69 0.880863
Target:  5'- uGCGC--GAAUGCACgUcGCCgCUCGGCg -3'
miRNA:   3'- cCGCGguUUUGCGUGgA-UGG-GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 76563 0.71 0.802999
Target:  5'- uGGCGCgcuguggacuCGAAGCGCccACCUcGCCCggaGGCg -3'
miRNA:   3'- -CCGCG----------GUUUUGCG--UGGA-UGGGag-CCG- -5'
30243 3' -55.5 NC_006273.1 + 76627 0.74 0.651863
Target:  5'- cGGCGUCGAcGGCGCACUggcgcgACCCgaccCGGUa -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGGa-----UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 79040 0.72 0.758189
Target:  5'- uGCGCCAGGcugggcccACGCGCCaccagaGCCUgCGGCg -3'
miRNA:   3'- cCGCGGUUU--------UGCGUGGa-----UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 80213 0.7 0.866781
Target:  5'- cGGCGUCcugcAGACaGUaacgGCCUaccugggcgcgGCCCUCGGCa -3'
miRNA:   3'- -CCGCGGu---UUUG-CG----UGGA-----------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 80432 0.67 0.954732
Target:  5'- gGGCaGCuCAAcGCGCGCCaGCucacgcaacaucuCCUCGGUc -3'
miRNA:   3'- -CCG-CG-GUUuUGCGUGGaUG-------------GGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.