miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 234813 0.77 0.505433
Target:  5'- cGGCGCCAuaaAGGCGCuuagcCCUGuCCCgcacCGGCg -3'
miRNA:   3'- -CCGCGGU---UUUGCGu----GGAU-GGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 233896 0.77 0.47214
Target:  5'- aGCGCCAGGuacaguccguccugcGCGCACagACCCUCGGg -3'
miRNA:   3'- cCGCGGUUU---------------UGCGUGgaUGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 233665 0.68 0.922366
Target:  5'- cGGCGCagcucccguccGAGCGCcgucGCCU--CCUCGGCg -3'
miRNA:   3'- -CCGCGgu---------UUUGCG----UGGAugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 233646 0.67 0.944609
Target:  5'- cGGCGUCGAAGucgcuUGCGCUgucgGCCCagucgccaccgccgCGGCg -3'
miRNA:   3'- -CCGCGGUUUU-----GCGUGGa---UGGGa-------------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 233575 0.67 0.93834
Target:  5'- uGCGCCAGcuccugccACGCGCCcagcaGCaCCaUCGGCu -3'
miRNA:   3'- cCGCGGUUu-------UGCGUGGa----UG-GG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 233209 0.67 0.955109
Target:  5'- cGGCGCCGc--CGCugCUGCCgCUgCcGCc -3'
miRNA:   3'- -CCGCGGUuuuGCGugGAUGG-GA-GcCG- -5'
30243 3' -55.5 NC_006273.1 + 233066 0.67 0.947163
Target:  5'- uGGCGgCGAaaGACGCGau--CCCUgGGCu -3'
miRNA:   3'- -CCGCgGUU--UUGCGUggauGGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 233018 0.71 0.811557
Target:  5'- aGCGCCA--GCGCGCCcagcacGCCCgCGcGCa -3'
miRNA:   3'- cCGCGGUuuUGCGUGGa-----UGGGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 232257 0.66 0.962203
Target:  5'- --aGCCA--AUGCaAUCUugUCUCGGCa -3'
miRNA:   3'- ccgCGGUuuUGCG-UGGAugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 231717 0.68 0.921829
Target:  5'- cGGCGUCGGcAUGCcgcugaucgcagugGCCccaCCUCGGCa -3'
miRNA:   3'- -CCGCGGUUuUGCG--------------UGGaugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 230437 0.72 0.776485
Target:  5'- cGGCuuccCCAGAuCGCugCUGCUC-CGGCg -3'
miRNA:   3'- -CCGc---GGUUUuGCGugGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 227117 0.74 0.64195
Target:  5'- cGGCGUgGGuAUGCGCCgcUGCCCUacCGGCu -3'
miRNA:   3'- -CCGCGgUUuUGCGUGG--AUGGGA--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 226984 1.15 0.002311
Target:  5'- cGGCGCCAAAACGCACCUACCCUCGGCg -3'
miRNA:   3'- -CCGCGGUUUUGCGUGGAUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 220466 0.72 0.767394
Target:  5'- --gGCCGugGCGUACgaGCCCUCaGGCg -3'
miRNA:   3'- ccgCGGUuuUGCGUGgaUGGGAG-CCG- -5'
30243 3' -55.5 NC_006273.1 + 219868 0.68 0.933595
Target:  5'- uGGgGUCcAGACGCuCCcacgcGCCCUCGuGCg -3'
miRNA:   3'- -CCgCGGuUUUGCGuGGa----UGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 218289 0.67 0.960162
Target:  5'- cGGCGUuccgCGAAgucgccgcggaccacGCGCGCCUGCCagaUGGUa -3'
miRNA:   3'- -CCGCG----GUUU---------------UGCGUGGAUGGga-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 216713 0.67 0.947163
Target:  5'- -aCGCCAaacuugucGAGCaGCACCaUGCCgCUgGGCa -3'
miRNA:   3'- ccGCGGU--------UUUG-CGUGG-AUGG-GAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 214883 0.7 0.828206
Target:  5'- cGGCacaaaGCCGcugcGGCGCACCUACCCUUc-- -3'
miRNA:   3'- -CCG-----CGGUu---UUGCGUGGAUGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 213668 0.67 0.93834
Target:  5'- gGGCGagaAGAGcCGCGCCgacaaagGCCUgCGGCg -3'
miRNA:   3'- -CCGCgg-UUUU-GCGUGGa------UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 213612 0.67 0.93834
Target:  5'- cGCGCCAGGAuCGCaACCcaaaagcgagGCCCccaGGCa -3'
miRNA:   3'- cCGCGGUUUU-GCG-UGGa---------UGGGag-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.