miRNA display CGI


Results 41 - 60 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 199688 0.73 0.681485
Target:  5'- gGGCacGCCuuuGCGUACCUGCCC--GGCg -3'
miRNA:   3'- -CCG--CGGuuuUGCGUGGAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 199625 0.73 0.691293
Target:  5'- aGgGCCGGAGCGCGUCUuCCC-CGGCu -3'
miRNA:   3'- cCgCGGUUUUGCGUGGAuGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 199575 0.73 0.720406
Target:  5'- cGGCGCUucu-CGUGCCUGCgCCaggCGGCc -3'
miRNA:   3'- -CCGCGGuuuuGCGUGGAUG-GGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 198870 0.68 0.928626
Target:  5'- cGGUccGCCGGucucGACGgACCgcgccGCCgUCGGCa -3'
miRNA:   3'- -CCG--CGGUU----UUGCgUGGa----UGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198827 0.69 0.887595
Target:  5'- uGCGCaCGGcGCGCgAUCUgggGCUCUCGGCc -3'
miRNA:   3'- cCGCG-GUUuUGCG-UGGA---UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198757 0.72 0.780088
Target:  5'- uGCGCCuacguaGAGGCGCACCgcgaggcgcaacugACCCUCaucuGGCc -3'
miRNA:   3'- cCGCGG------UUUUGCGUGGa-------------UGGGAG----CCG- -5'
30243 3' -55.5 NC_006273.1 + 198652 0.69 0.904702
Target:  5'- cGgGCCGAGcugugccgccgcucGCGCGCCUccGCUCgCGGCc -3'
miRNA:   3'- cCgCGGUUU--------------UGCGUGGA--UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198591 0.68 0.927091
Target:  5'- cGGUGCaCGAAucaucuGCGCGCgUcugcaaccuaacguGCCCUUGGUg -3'
miRNA:   3'- -CCGCG-GUUU------UGCGUGgA--------------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 197573 0.67 0.960162
Target:  5'- cGGaGCCAucuACGCGCCUGUCagggcgaugagacaUCGGCg -3'
miRNA:   3'- -CCgCGGUuu-UGCGUGGAUGGg-------------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 197364 0.7 0.836283
Target:  5'- cGCGCUggGACGCgcugcACCUGCaCC-CGcGCg -3'
miRNA:   3'- cCGCGGuuUUGCG-----UGGAUG-GGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 197280 0.72 0.780088
Target:  5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3'
miRNA:   3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 197133 0.67 0.95876
Target:  5'- cGGCGUCGGGgaccgugccGCGCGCCaUGCUggUGGUg -3'
miRNA:   3'- -CCGCGGUUU---------UGCGUGG-AUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 196917 0.68 0.918013
Target:  5'- aGGcCGCCGgcggGGACGCGCCgUGCgCgaUGGCa -3'
miRNA:   3'- -CC-GCGGU----UUUGCGUGG-AUG-GgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 196818 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 196794 0.66 0.96544
Target:  5'- cGGCacaGCCGcAGGCGC-UCUGCCagUUGGCg -3'
miRNA:   3'- -CCG---CGGU-UUUGCGuGGAUGGg-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 196746 0.66 0.968478
Target:  5'- cGGCGCCGcacccCGCGuCgCUGCUgaCGGCc -3'
miRNA:   3'- -CCGCGGUuuu--GCGU-G-GAUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 196599 0.68 0.91237
Target:  5'- cGCGCCGAGAgGCGacgGCgCUCGGa -3'
miRNA:   3'- cCGCGGUUUUgCGUggaUGgGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 196552 0.7 0.828206
Target:  5'- cGCGCgc-GACGCugCUGCCUcagcCGGCg -3'
miRNA:   3'- cCGCGguuUUGCGugGAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 196376 0.68 0.923431
Target:  5'- -cCGCCAuGGACGagcagaGCCcGCCCUUGGUg -3'
miRNA:   3'- ccGCGGU-UUUGCg-----UGGaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 196171 0.69 0.887595
Target:  5'- -aCGCgGGcACGCugCUGCCgCUCGGa -3'
miRNA:   3'- ccGCGgUUuUGCGugGAUGG-GAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.