miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 195926 0.68 0.933595
Target:  5'- uGCGCCuacGGCGaCGCCggGCCa-CGGCg -3'
miRNA:   3'- cCGCGGuu-UUGC-GUGGa-UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 195181 0.66 0.96544
Target:  5'- gGGCGCCAAAACGCcgucggacGCCgugcagaacAUCCUCc-- -3'
miRNA:   3'- -CCGCGGUUUUGCG--------UGGa--------UGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 194875 0.77 0.505433
Target:  5'- cGGCGCCAuaaAGGCGCuuagcCCUGuCCCgcacCGGCg -3'
miRNA:   3'- -CCGCGGU---UUUGCGu----GGAU-GGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 194827 0.69 0.880863
Target:  5'- gGGCGgCAAGGCgGUgguaggucgACC-GCCCUCGGUc -3'
miRNA:   3'- -CCGCgGUUUUG-CG---------UGGaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 193847 0.71 0.802999
Target:  5'- cGGCGCCGGAguuaACGUuCCUGCUggcgcCGGCg -3'
miRNA:   3'- -CCGCGGUUU----UGCGuGGAUGGga---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 193166 0.81 0.322249
Target:  5'- cGGcCGCCGAAGCcCACgCUGCCCguUCGGCg -3'
miRNA:   3'- -CC-GCGGUUUUGcGUG-GAUGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 192525 0.67 0.95876
Target:  5'- cGGUGCgCGAGACGCuggucaCaGCCaUCGGCc -3'
miRNA:   3'- -CCGCG-GUUUUGCGug----GaUGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 192372 0.67 0.95876
Target:  5'- cGCGUCGcgGCuaCACUUACCCguUCGGUg -3'
miRNA:   3'- cCGCGGUuuUGc-GUGGAUGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 191806 0.73 0.710762
Target:  5'- cGCGCCGcg--GCACUUGCCUaCGGCg -3'
miRNA:   3'- cCGCGGUuuugCGUGGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 191486 0.69 0.880863
Target:  5'- cGGCGCCGccGC-CGCUUggACCUUCGuGCg -3'
miRNA:   3'- -CCGCGGUuuUGcGUGGA--UGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 190581 0.73 0.710762
Target:  5'- cGGCuGCCGAGucACGUccGCCggcGCCCaUCGGCc -3'
miRNA:   3'- -CCG-CGGUUU--UGCG--UGGa--UGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 190532 0.72 0.739474
Target:  5'- gGGCGCCAcuccuACGcCACgCgauugGCCgUCGGCg -3'
miRNA:   3'- -CCGCGGUuu---UGC-GUG-Ga----UGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 190165 0.66 0.971045
Target:  5'- aGUGCUucAGCaGCAgcuucuuCUUGCCUUCGGCg -3'
miRNA:   3'- cCGCGGuuUUG-CGU-------GGAUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 189836 0.66 0.96544
Target:  5'- cGGCcacGCCGGGugGCAUCUGCggcaUGGCg -3'
miRNA:   3'- -CCG---CGGUUUugCGUGGAUGgga-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 188574 0.74 0.632029
Target:  5'- cGGCGCCcAggUGCACgCUGaugUCCUCGGg -3'
miRNA:   3'- -CCGCGGuUuuGCGUG-GAU---GGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 188465 0.78 0.441745
Target:  5'- aGGCGCgGAuAGCGCGCCUcGgCCUCGGg -3'
miRNA:   3'- -CCGCGgUU-UUGCGUGGA-UgGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 186159 0.7 0.851906
Target:  5'- aGGUGCCAGAACGCAaagaguUCCUCGuacGCc -3'
miRNA:   3'- -CCGCGGUUUUGCGUggau--GGGAGC---CG- -5'
30243 3' -55.5 NC_006273.1 + 184427 0.67 0.941529
Target:  5'- uGCGCCGGAGC-CGaauccaaaCUGCCCuugaacguaacguuUCGGCa -3'
miRNA:   3'- cCGCGGUUUUGcGUg-------GAUGGG--------------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 183575 0.67 0.95876
Target:  5'- aGGgGCC---GCGCACUuuUGCCaagUCGGUg -3'
miRNA:   3'- -CCgCGGuuuUGCGUGG--AUGGg--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 180087 0.69 0.894114
Target:  5'- aGGCGCacuuucuGGCGCGCggACuCCUgGGCu -3'
miRNA:   3'- -CCGCGguu----UUGCGUGgaUG-GGAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.