miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 180052 0.7 0.836283
Target:  5'- cGGCGCCGucuucGGCGUGCau-CCCgauacgCGGCa -3'
miRNA:   3'- -CCGCGGUu----UUGCGUGgauGGGa-----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 179828 0.67 0.94242
Target:  5'- uGGCGCCugugcauGAAGCGCGaggguUCUAUCUUCaGCu -3'
miRNA:   3'- -CCGCGG-------UUUUGCGU-----GGAUGGGAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 178158 0.74 0.675581
Target:  5'- cGCGUCAagcguaacguuaaaaAAGCGC-CCUGCCCUacgGGCa -3'
miRNA:   3'- cCGCGGU---------------UUUGCGuGGAUGGGAg--CCG- -5'
30243 3' -55.5 NC_006273.1 + 177249 0.68 0.918013
Target:  5'- uGGUGCgGAGGCcgcuGCGCgUGCCCgUGGUg -3'
miRNA:   3'- -CCGCGgUUUUG----CGUGgAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 176745 0.67 0.93834
Target:  5'- cGCGCUuGGACGCGCUaa-UgUCGGCg -3'
miRNA:   3'- cCGCGGuUUUGCGUGGaugGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 176627 0.67 0.951244
Target:  5'- uGCGCguagcgacgagCAGAGCuGCAUCUACCCgacgUGGUu -3'
miRNA:   3'- cCGCG-----------GUUUUG-CGUGGAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 171756 0.73 0.691293
Target:  5'- uGCGCUAcgGAGCGCGCCaUGagCUCGGCc -3'
miRNA:   3'- cCGCGGU--UUUGCGUGG-AUggGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 171700 0.66 0.968478
Target:  5'- cGGCGCUGcuGCGCAUCacgUCCUCGaucaGCg -3'
miRNA:   3'- -CCGCGGUuuUGCGUGGau-GGGAGC----CG- -5'
30243 3' -55.5 NC_006273.1 + 171487 0.67 0.951244
Target:  5'- aGGCGCucguuCAAGcCGCGCagAUUCUCGGCc -3'
miRNA:   3'- -CCGCG-----GUUUuGCGUGgaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 171385 0.69 0.894114
Target:  5'- aGCGCCuugcucaucuGGGC-CACCgugcggugACCCUUGGCg -3'
miRNA:   3'- cCGCGGu---------UUUGcGUGGa-------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 171355 0.66 0.968478
Target:  5'- cGCGCCAccaAAAC-CGCCgcGCCCauggUGGCu -3'
miRNA:   3'- cCGCGGU---UUUGcGUGGa-UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 171302 0.72 0.758189
Target:  5'- cGGCGCCAuugGAACGUugcGCCUGCUCga-GCg -3'
miRNA:   3'- -CCGCGGU---UUUGCG---UGGAUGGGagcCG- -5'
30243 3' -55.5 NC_006273.1 + 171131 0.68 0.928116
Target:  5'- cGGCcgccGCCGcAACGC-CCgUGCCCgcgggccaggucaUCGGCg -3'
miRNA:   3'- -CCG----CGGUuUUGCGuGG-AUGGG-------------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 171078 0.67 0.955109
Target:  5'- gGGCGCCGAuucccAGgGCGCCUccaagaACUCgcguaaGGCg -3'
miRNA:   3'- -CCGCGGUU-----UUgCGUGGA------UGGGag----CCG- -5'
30243 3' -55.5 NC_006273.1 + 170945 0.66 0.973974
Target:  5'- aGgGCCAGGuUGCACaugCUACCCa-GGCg -3'
miRNA:   3'- cCgCGGUUUuGCGUG---GAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 170668 0.68 0.923431
Target:  5'- cGCGUCcAGACGCGC--GCCCUCuuccaugauGGCg -3'
miRNA:   3'- cCGCGGuUUUGCGUGgaUGGGAG---------CCG- -5'
30243 3' -55.5 NC_006273.1 + 170283 0.66 0.969351
Target:  5'- -aCGCCGAAGCccgugagcaccaucaGCACCUgauggagACCCUC-GCa -3'
miRNA:   3'- ccGCGGUUUUG---------------CGUGGA-------UGGGAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 169676 0.7 0.866056
Target:  5'- cGGCGCCGugGCcguugccgcguuaGCGCC-GCUUUCGGUa -3'
miRNA:   3'- -CCGCGGUuuUG-------------CGUGGaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 168617 0.76 0.553234
Target:  5'- aGCGCCGAGcCGCGgCUGCCCgggUCGcGCa -3'
miRNA:   3'- cCGCGGUUUuGCGUgGAUGGG---AGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 168526 0.67 0.947163
Target:  5'- cGCGUUcuguAGGCGCugCUGCaCUUCGGg -3'
miRNA:   3'- cCGCGGu---UUUGCGugGAUG-GGAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.