miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 149675 0.74 0.651863
Target:  5'- cGGCGUUAGGuggcuguugcuGCGCGCCgguggcgacugGCUCUCGGCc -3'
miRNA:   3'- -CCGCGGUUU-----------UGCGUGGa----------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 104097 0.75 0.602294
Target:  5'- aGGCcaugGUCAGua-GCACCUgGCCCUCGGUg -3'
miRNA:   3'- -CCG----CGGUUuugCGUGGA-UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 129538 0.75 0.602294
Target:  5'- cGGCGCUgcgcCGCGCCg--CCUCGGCu -3'
miRNA:   3'- -CCGCGGuuuuGCGUGGaugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 37417 0.74 0.64195
Target:  5'- aGCGCCGGGGCGCGCC-GCUaCUUGGg -3'
miRNA:   3'- cCGCGGUUUUGCGUGGaUGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 133728 0.74 0.64195
Target:  5'- uGGCguugGCCGAguAGCGUGCCgucgUGCCUUCGGCc -3'
miRNA:   3'- -CCG----CGGUU--UUGCGUGG----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 227117 0.74 0.64195
Target:  5'- cGGCGUgGGuAUGCGCCgcUGCCCUacCGGCu -3'
miRNA:   3'- -CCGCGgUUuUGCGUGG--AUGGGA--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 43036 0.74 0.651863
Target:  5'- cGCGCCAcggccgcgcAACGCACCUcgaACuCCUCGaGCa -3'
miRNA:   3'- cCGCGGUu--------UUGCGUGGA---UG-GGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 59728 0.74 0.651863
Target:  5'- cGGCcaauuccaCAAAACGCGCCgucUCCUCGGCc -3'
miRNA:   3'- -CCGcg------GUUUUGCGUGGau-GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 76627 0.74 0.651863
Target:  5'- cGGCGUCGAcGGCGCACUggcgcgACCCgaccCGGUa -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGGa-----UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 33220 0.75 0.582564
Target:  5'- gGGC-CCGGuAGCGCACCgaggGCCCcggggCGGCg -3'
miRNA:   3'- -CCGcGGUU-UUGCGUGGa---UGGGa----GCCG- -5'
30243 3' -55.5 NC_006273.1 + 147896 0.76 0.533925
Target:  5'- cGCGCCAGcuACGCuGCgCUGgCCUCGGCc -3'
miRNA:   3'- cCGCGGUUu-UGCG-UG-GAUgGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 151730 0.76 0.52436
Target:  5'- gGGCGCCGcgucGCGCGCCUugCgCaCGGCc -3'
miRNA:   3'- -CCGCGGUuu--UGCGUGGAugG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 151360 0.8 0.367011
Target:  5'- uGGCGCCG--GCGCGCCUuCUCgCGGCu -3'
miRNA:   3'- -CCGCGGUuuUGCGUGGAuGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 102569 0.79 0.402453
Target:  5'- cGGCGUCGAGACagacggcgugauugaGCACCUGCgCCaCGGCg -3'
miRNA:   3'- -CCGCGGUUUUG---------------CGUGGAUG-GGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 55306 0.78 0.450571
Target:  5'- cGCGCCAGAAagUGCGCCUGCCgcguaUCGGg -3'
miRNA:   3'- cCGCGGUUUU--GCGUGGAUGGg----AGCCg -5'
30243 3' -55.5 NC_006273.1 + 33402 0.78 0.459493
Target:  5'- aGGCGCUGGAcGCGCACC-GCCUcgggcgUCGGCg -3'
miRNA:   3'- -CCGCGGUUU-UGCGUGGaUGGG------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 233896 0.77 0.47214
Target:  5'- aGCGCCAGGuacaguccguccugcGCGCACagACCCUCGGg -3'
miRNA:   3'- cCGCGGUUU---------------UGCGUGgaUGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 22253 0.77 0.505433
Target:  5'- gGGCGCCGGcgagcGACGCGgCUccGCCgUCGGUg -3'
miRNA:   3'- -CCGCGGUU-----UUGCGUgGA--UGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 32890 0.77 0.505433
Target:  5'- uGGUGCCGAuGACGCGCaacugACCCUgGGUc -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGga---UGGGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 194875 0.77 0.505433
Target:  5'- cGGCGCCAuaaAGGCGCuuagcCCUGuCCCgcacCGGCg -3'
miRNA:   3'- -CCGCGGU---UUUGCGu----GGAU-GGGa---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.