miRNA display CGI


Results 41 - 60 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 233896 0.77 0.47214
Target:  5'- aGCGCCAGGuacaguccguccugcGCGCACagACCCUCGGg -3'
miRNA:   3'- cCGCGGUUU---------------UGCGUGgaUGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 33402 0.78 0.459493
Target:  5'- aGGCGCUGGAcGCGCACC-GCCUcgggcgUCGGCg -3'
miRNA:   3'- -CCGCGGUUU-UGCGUGGaUGGG------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 55306 0.78 0.450571
Target:  5'- cGCGCCAGAAagUGCGCCUGCCgcguaUCGGg -3'
miRNA:   3'- cCGCGGUUUU--GCGUGGAUGGg----AGCCg -5'
30243 3' -55.5 NC_006273.1 + 102569 0.79 0.402453
Target:  5'- cGGCGUCGAGACagacggcgugauugaGCACCUGCgCCaCGGCg -3'
miRNA:   3'- -CCGCGGUUUUG---------------CGUGGAUG-GGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 151360 0.8 0.367011
Target:  5'- uGGCGCCG--GCGCGCCUuCUCgCGGCu -3'
miRNA:   3'- -CCGCGGUuuUGCGUGGAuGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 37417 0.74 0.64195
Target:  5'- aGCGCCGGGGCGCGCC-GCUaCUUGGg -3'
miRNA:   3'- cCGCGGUUUUGCGUGGaUGG-GAGCCg -5'
30243 3' -55.5 NC_006273.1 + 133728 0.74 0.64195
Target:  5'- uGGCguugGCCGAguAGCGUGCCgucgUGCCUUCGGCc -3'
miRNA:   3'- -CCG----CGGUU--UUGCGUGG----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 144046 0.73 0.720406
Target:  5'- -uCGCCAAGAUGCugCggGCCCaCGGUa -3'
miRNA:   3'- ccGCGGUUUUGCGugGa-UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 72958 0.73 0.720406
Target:  5'- aGCGCCGucAC-CGCCUcCCgCUCGGCc -3'
miRNA:   3'- cCGCGGUuuUGcGUGGAuGG-GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 191806 0.73 0.710762
Target:  5'- cGCGCCGcg--GCACUUGCCUaCGGCg -3'
miRNA:   3'- cCGCGGUuuugCGUGGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 154046 0.73 0.710762
Target:  5'- uGCGCaAGGGCGUugACgUGCUCUCGGCg -3'
miRNA:   3'- cCGCGgUUUUGCG--UGgAUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 190581 0.73 0.710762
Target:  5'- cGGCuGCCGAGucACGUccGCCggcGCCCaUCGGCc -3'
miRNA:   3'- -CCG-CGGUUU--UGCG--UGGa--UGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 199625 0.73 0.691293
Target:  5'- aGgGCCGGAGCGCGUCUuCCC-CGGCu -3'
miRNA:   3'- cCgCGGUUUUGCGUGGAuGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 40908 0.73 0.681485
Target:  5'- cGGCGUCG--ACGCACCgucUGCgCUCGGg -3'
miRNA:   3'- -CCGCGGUuuUGCGUGG---AUGgGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 61423 0.73 0.680502
Target:  5'- cGCGCCcGGcUGCGCCUcgaacucuaccagGCCCUCGGg -3'
miRNA:   3'- cCGCGGuUUuGCGUGGA-------------UGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 149675 0.74 0.651863
Target:  5'- cGGCGUUAGGuggcuguugcuGCGCGCCgguggcgacugGCUCUCGGCc -3'
miRNA:   3'- -CCGCGGUUU-----------UGCGUGGa----------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 76627 0.74 0.651863
Target:  5'- cGGCGUCGAcGGCGCACUggcgcgACCCgaccCGGUa -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGGa-----UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 59728 0.74 0.651863
Target:  5'- cGGCcaauuccaCAAAACGCGCCgucUCCUCGGCc -3'
miRNA:   3'- -CCGcg------GUUUUGCGUGGau-GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 43036 0.74 0.651863
Target:  5'- cGCGCCAcggccgcgcAACGCACCUcgaACuCCUCGaGCa -3'
miRNA:   3'- cCGCGGUu--------UUGCGUGGA---UG-GGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 227117 0.74 0.64195
Target:  5'- cGGCGUgGGuAUGCGCCgcUGCCCUacCGGCu -3'
miRNA:   3'- -CCGCGgUUuUGCGUGG--AUGGGA--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.