miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 76627 0.74 0.651863
Target:  5'- cGGCGUCGAcGGCGCACUggcgcgACCCgaccCGGUa -3'
miRNA:   3'- -CCGCGGUU-UUGCGUGGa-----UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 149675 0.74 0.651863
Target:  5'- cGGCGUUAGGuggcuguugcuGCGCGCCgguggcgacugGCUCUCGGCc -3'
miRNA:   3'- -CCGCGGUUU-----------UGCGUGGa----------UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 79040 0.72 0.758189
Target:  5'- uGCGCCAGGcugggcccACGCGCCaccagaGCCUgCGGCg -3'
miRNA:   3'- cCGCGGUUU--------UGCGUGGa-----UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 51993 0.72 0.758189
Target:  5'- cGUGCCAGAACuGCGCC-AUgCUgGGCg -3'
miRNA:   3'- cCGCGGUUUUG-CGUGGaUGgGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 87996 0.72 0.764644
Target:  5'- gGGCGCgAAGAgcgccgacaggucgUGCACCUcCCCccCGGCg -3'
miRNA:   3'- -CCGCGgUUUU--------------GCGUGGAuGGGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 220466 0.72 0.767394
Target:  5'- --gGCCGugGCGUACgaGCCCUCaGGCg -3'
miRNA:   3'- ccgCGGUuuUGCGUGgaUGGGAG-CCG- -5'
30243 3' -55.5 NC_006273.1 + 114220 0.72 0.776485
Target:  5'- cGCGCCGccuCGgAUCUACUCaUCGGCa -3'
miRNA:   3'- cCGCGGUuuuGCgUGGAUGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 164789 0.72 0.776485
Target:  5'- cGGCGCuCAGAcaaaacACGCgaGCCUGCUCgUCGGg -3'
miRNA:   3'- -CCGCG-GUUU------UGCG--UGGAUGGG-AGCCg -5'
30243 3' -55.5 NC_006273.1 + 197280 0.72 0.780088
Target:  5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3'
miRNA:   3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 69408 0.71 0.785455
Target:  5'- uGGCGCUgcGAGACGaugGCCgACCCcUGGCa -3'
miRNA:   3'- -CCGCGG--UUUUGCg--UGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 89517 0.72 0.739474
Target:  5'- cGGCuGCUcuuGAGGCGCACCUccgaaacgaaACCCagGGCc -3'
miRNA:   3'- -CCG-CGG---UUUUGCGUGGA----------UGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 144171 0.72 0.72998
Target:  5'- cGCGCCGAGAU-CGCCgagGCCCUgGaGCg -3'
miRNA:   3'- cCGCGGUUUUGcGUGGa--UGGGAgC-CG- -5'
30243 3' -55.5 NC_006273.1 + 61423 0.73 0.680502
Target:  5'- cGCGCCcGGcUGCGCCUcgaacucuaccagGCCCUCGGg -3'
miRNA:   3'- cCGCGGuUUuGCGUGGA-------------UGGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 40908 0.73 0.681485
Target:  5'- cGGCGUCG--ACGCACCgucUGCgCUCGGg -3'
miRNA:   3'- -CCGCGGUuuUGCGUGG---AUGgGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 199625 0.73 0.691293
Target:  5'- aGgGCCGGAGCGCGUCUuCCC-CGGCu -3'
miRNA:   3'- cCgCGGUUUUGCGUGGAuGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 190581 0.73 0.710762
Target:  5'- cGGCuGCCGAGucACGUccGCCggcGCCCaUCGGCc -3'
miRNA:   3'- -CCG-CGGUUU--UGCG--UGGa--UGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 154046 0.73 0.710762
Target:  5'- uGCGCaAGGGCGUugACgUGCUCUCGGCg -3'
miRNA:   3'- cCGCGgUUUUGCG--UGgAUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 191806 0.73 0.710762
Target:  5'- cGCGCCGcg--GCACUUGCCUaCGGCg -3'
miRNA:   3'- cCGCGGUuuugCGUGGAUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 72958 0.73 0.720406
Target:  5'- aGCGCCGucAC-CGCCUcCCgCUCGGCc -3'
miRNA:   3'- cCGCGGUuuUGcGUGGAuGG-GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 144046 0.73 0.720406
Target:  5'- -uCGCCAAGAUGCugCggGCCCaCGGUa -3'
miRNA:   3'- ccGCGGUUUUGCGugGa-UGGGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.