miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 100840 0.71 0.794296
Target:  5'- gGGUGCC-AGACGUAg--ACUCUCGGCc -3'
miRNA:   3'- -CCGCGGuUUUGCGUggaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 196818 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 76563 0.71 0.802999
Target:  5'- uGGCGCgcuguggacuCGAAGCGCccACCUcGCCCggaGGCg -3'
miRNA:   3'- -CCGCG----------GUUUUGCG--UGGA-UGGGag-CCG- -5'
30243 3' -55.5 NC_006273.1 + 233018 0.71 0.811557
Target:  5'- aGCGCCA--GCGCGCCcagcacGCCCgCGcGCa -3'
miRNA:   3'- cCGCGGUuuUGCGUGGa-----UGGGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 196552 0.7 0.828206
Target:  5'- cGCGCgc-GACGCugCUGCCUcagcCGGCg -3'
miRNA:   3'- cCGCGguuUUGCGugGAUGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 214883 0.7 0.828206
Target:  5'- cGGCacaaaGCCGcugcGGCGCACCUACCCUUc-- -3'
miRNA:   3'- -CCG-----CGGUu---UUGCGUGGAUGGGAGccg -5'
30243 3' -55.5 NC_006273.1 + 591 0.7 0.836283
Target:  5'- uGGCGCCGcAAGCGCuccGCCgcUUCUgCGGCu -3'
miRNA:   3'- -CCGCGGU-UUUGCG---UGGauGGGA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 69408 0.71 0.785455
Target:  5'- uGGCGCUgcGAGACGaugGCCgACCCcUGGCa -3'
miRNA:   3'- -CCGCGG--UUUUGCg--UGGaUGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 197280 0.72 0.780088
Target:  5'- uGGCGCUggGGCGCgagucggcgcccgccGCCgagGCCgCgCGGCg -3'
miRNA:   3'- -CCGCGGuuUUGCG---------------UGGa--UGG-GaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 164789 0.72 0.776485
Target:  5'- cGGCGCuCAGAcaaaacACGCgaGCCUGCUCgUCGGg -3'
miRNA:   3'- -CCGCG-GUUU------UGCG--UGGAUGGG-AGCCg -5'
30243 3' -55.5 NC_006273.1 + 72958 0.73 0.720406
Target:  5'- aGCGCCGucAC-CGCCUcCCgCUCGGCc -3'
miRNA:   3'- cCGCGGUuuUGcGUGGAuGG-GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 144046 0.73 0.720406
Target:  5'- -uCGCCAAGAUGCugCggGCCCaCGGUa -3'
miRNA:   3'- ccGCGGUUUUGCGugGa-UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 144171 0.72 0.72998
Target:  5'- cGCGCCGAGAU-CGCCgagGCCCUgGaGCg -3'
miRNA:   3'- cCGCGGUUUUGcGUGGa--UGGGAgC-CG- -5'
30243 3' -55.5 NC_006273.1 + 89517 0.72 0.739474
Target:  5'- cGGCuGCUcuuGAGGCGCACCUccgaaacgaaACCCagGGCc -3'
miRNA:   3'- -CCG-CGG---UUUUGCGUGGA----------UGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 79040 0.72 0.758189
Target:  5'- uGCGCCAGGcugggcccACGCGCCaccagaGCCUgCGGCg -3'
miRNA:   3'- cCGCGGUUU--------UGCGUGGa-----UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 51993 0.72 0.758189
Target:  5'- cGUGCCAGAACuGCGCC-AUgCUgGGCg -3'
miRNA:   3'- cCGCGGUUUUG-CGUGGaUGgGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 87996 0.72 0.764644
Target:  5'- gGGCGCgAAGAgcgccgacaggucgUGCACCUcCCCccCGGCg -3'
miRNA:   3'- -CCGCGgUUUU--------------GCGUGGAuGGGa-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 220466 0.72 0.767394
Target:  5'- --gGCCGugGCGUACgaGCCCUCaGGCg -3'
miRNA:   3'- ccgCGGUuuUGCGUGgaUGGGAG-CCG- -5'
30243 3' -55.5 NC_006273.1 + 114220 0.72 0.776485
Target:  5'- cGCGCCGccuCGgAUCUACUCaUCGGCa -3'
miRNA:   3'- cCGCGGUuuuGCgUGGAUGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 120945 0.7 0.836283
Target:  5'- uGGCGCCGccgccgguGACGCGgggcguCUUACgCUCGGUg -3'
miRNA:   3'- -CCGCGGUu-------UUGCGU------GGAUGgGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.