miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 123474 0.81 0.288161
Target:  5'- gGGCGCCcuuGAGCugGCGCagGCCCUCGGCg -3'
miRNA:   3'- -CCGCGGu--UUUG--CGUGgaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 201955 0.73 0.681485
Target:  5'- uGCGCCGGGgcugucGCGCGCCgccgacGCCCgaggCGGUg -3'
miRNA:   3'- cCGCGGUUU------UGCGUGGa-----UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 162832 0.73 0.691293
Target:  5'- cGGgGCCucauCGCAgCCUugCgUCGGCa -3'
miRNA:   3'- -CCgCGGuuuuGCGU-GGAugGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 84169 0.66 0.974229
Target:  5'- cGGC-CCAGAGCGUgucgGCCgauuucgaaauggagGCCCUgaugauccgCGGCg -3'
miRNA:   3'- -CCGcGGUUUUGCG----UGGa--------------UGGGA---------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 145692 0.79 0.407452
Target:  5'- gGGCGCUAGcgUGgACCUACCUaUCGGCu -3'
miRNA:   3'- -CCGCGGUUuuGCgUGGAUGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 188465 0.78 0.441745
Target:  5'- aGGCGCgGAuAGCGCGCCUcGgCCUCGGg -3'
miRNA:   3'- -CCGCGgUU-UUGCGUGGA-UgGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 234813 0.77 0.505433
Target:  5'- cGGCGCCAuaaAGGCGCuuagcCCUGuCCCgcacCGGCg -3'
miRNA:   3'- -CCGCGGU---UUUGCGu----GGAU-GGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 10194 0.76 0.514861
Target:  5'- cGGUGUCAuGAUaGCACCaguucUGCCCUCGGUg -3'
miRNA:   3'- -CCGCGGUuUUG-CGUGG-----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 141434 0.75 0.572746
Target:  5'- cGGCGCaugcgCAGGGCGCGCCU-CCCgCGGg -3'
miRNA:   3'- -CCGCG-----GUUUUGCGUGGAuGGGaGCCg -5'
30243 3' -55.5 NC_006273.1 + 199688 0.73 0.681485
Target:  5'- gGGCacGCCuuuGCGUACCUGCCC--GGCg -3'
miRNA:   3'- -CCG--CGGuuuUGCGUGGAUGGGagCCG- -5'
30243 3' -55.5 NC_006273.1 + 188574 0.74 0.632029
Target:  5'- cGGCGCCcAggUGCACgCUGaugUCCUCGGg -3'
miRNA:   3'- -CCGCGGuUuuGCGUG-GAU---GGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 70814 0.76 0.562967
Target:  5'- aGCGCCA--GCG-GCCUgGCCUUCGGCa -3'
miRNA:   3'- cCGCGGUuuUGCgUGGA-UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 193166 0.81 0.322249
Target:  5'- cGGcCGCCGAAGCcCACgCUGCCCguUCGGCg -3'
miRNA:   3'- -CC-GCGGUUUUGcGUG-GAUGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 154926 0.74 0.661762
Target:  5'- aGCGgCAGuACGCcgccGCCUuuCCCUCGGCu -3'
miRNA:   3'- cCGCgGUUuUGCG----UGGAu-GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 48877 0.79 0.382852
Target:  5'- gGGCGCCAcagcucGCGCuACUUGCCCUagCGGCu -3'
miRNA:   3'- -CCGCGGUuu----UGCG-UGGAUGGGA--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 168617 0.76 0.553234
Target:  5'- aGCGCCGAGcCGCGgCUGCCCgggUCGcGCa -3'
miRNA:   3'- cCGCGGUUUuGCGUgGAUGGG---AGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 178158 0.74 0.675581
Target:  5'- cGCGUCAagcguaacguuaaaaAAGCGC-CCUGCCCUacgGGCa -3'
miRNA:   3'- cCGCGGU---------------UUUGCGuGGAUGGGAg--CCG- -5'
30243 3' -55.5 NC_006273.1 + 117946 0.73 0.691293
Target:  5'- --aGCCGGcGACGCACCUGCCa-CGGUa -3'
miRNA:   3'- ccgCGGUU-UUGCGUGGAUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 119612 0.79 0.399142
Target:  5'- gGGUGCCGAAGCGUACgaACCCUUGauucGCa -3'
miRNA:   3'- -CCGCGGUUUUGCGUGgaUGGGAGC----CG- -5'
30243 3' -55.5 NC_006273.1 + 39003 0.77 0.47214
Target:  5'- aGCGCCAGGuacaguccguccugcGCGCACagACCCUCGGg -3'
miRNA:   3'- cCGCGGUUU---------------UGCGUGgaUGGGAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.