miRNA display CGI


Results 21 - 40 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 199575 0.73 0.720406
Target:  5'- cGGCGCUucu-CGUGCCUGCgCCaggCGGCc -3'
miRNA:   3'- -CCGCGGuuuuGCGUGGAUG-GGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 162832 0.73 0.691293
Target:  5'- cGGgGCCucauCGCAgCCUugCgUCGGCa -3'
miRNA:   3'- -CCgCGGuuuuGCGU-GGAugGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 70814 0.76 0.562967
Target:  5'- aGCGCCA--GCG-GCCUgGCCUUCGGCa -3'
miRNA:   3'- cCGCGGUuuUGCgUGGA-UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 119612 0.79 0.399142
Target:  5'- gGGUGCCGAAGCGUACgaACCCUUGauucGCa -3'
miRNA:   3'- -CCGCGGUUUUGCGUGgaUGGGAGC----CG- -5'
30243 3' -55.5 NC_006273.1 + 211224 0.71 0.802135
Target:  5'- aGGcCGCCGAGACGUuaGCCauccaagaaauggUACCgUUGGCc -3'
miRNA:   3'- -CC-GCGGUUUUGCG--UGG-------------AUGGgAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 131039 0.72 0.776485
Target:  5'- cGCGCUAccuggccGCGCGCCaGCCCaucccccucUCGGCg -3'
miRNA:   3'- cCGCGGUuu-----UGCGUGGaUGGG---------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 201955 0.73 0.681485
Target:  5'- uGCGCCGGGgcugucGCGCGCCgccgacGCCCgaggCGGUg -3'
miRNA:   3'- cCGCGGUUU------UGCGUGGa-----UGGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 48877 0.79 0.382852
Target:  5'- gGGCGCCAcagcucGCGCuACUUGCCCUagCGGCu -3'
miRNA:   3'- -CCGCGGUuu----UGCG-UGGAUGGGA--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 81335 0.72 0.776485
Target:  5'- aGCGCCGAGA-GCACgUcaacGCCCUUGcGCa -3'
miRNA:   3'- cCGCGGUUUUgCGUGgA----UGGGAGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 193166 0.81 0.322249
Target:  5'- cGGcCGCCGAAGCcCACgCUGCCCguUCGGCg -3'
miRNA:   3'- -CC-GCGGUUUUGcGUG-GAUGGG--AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 117946 0.73 0.691293
Target:  5'- --aGCCGGcGACGCACCUGCCa-CGGUa -3'
miRNA:   3'- ccgCGGUU-UUGCGUGGAUGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 87509 0.73 0.720406
Target:  5'- uGGCGCgaugcaCAGcACGCACCUcaGCCggCGGCa -3'
miRNA:   3'- -CCGCG------GUUuUGCGUGGA--UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 154926 0.74 0.661762
Target:  5'- aGCGgCAGuACGCcgccGCCUuuCCCUCGGCu -3'
miRNA:   3'- cCGCgGUUuUGCG----UGGAu-GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 141434 0.75 0.572746
Target:  5'- cGGCGCaugcgCAGGGCGCGCCU-CCCgCGGg -3'
miRNA:   3'- -CCGCG-----GUUUUGCGUGGAuGGGaGCCg -5'
30243 3' -55.5 NC_006273.1 + 234813 0.77 0.505433
Target:  5'- cGGCGCCAuaaAGGCGCuuagcCCUGuCCCgcacCGGCg -3'
miRNA:   3'- -CCGCGGU---UUUGCGu----GGAU-GGGa---GCCG- -5'
30243 3' -55.5 NC_006273.1 + 145692 0.79 0.407452
Target:  5'- gGGCGCUAGcgUGgACCUACCUaUCGGCu -3'
miRNA:   3'- -CCGCGGUUuuGCgUGGAUGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 38125 0.71 0.811557
Target:  5'- aGCGCCA--GCGCGCCcagcacGCCCgCGcGCa -3'
miRNA:   3'- cCGCGGUuuUGCGUGGa-----UGGGaGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 1926 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 93649 0.71 0.782778
Target:  5'- uGGCGCCGGcGCGC-CCUGCUgggacgacgcaauggCGGCg -3'
miRNA:   3'- -CCGCGGUUuUGCGuGGAUGGga-------------GCCG- -5'
30243 3' -55.5 NC_006273.1 + 230437 0.72 0.776485
Target:  5'- cGGCuuccCCAGAuCGCugCUGCUC-CGGCg -3'
miRNA:   3'- -CCGc---GGUUUuGCGugGAUGGGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.