miRNA display CGI


Results 61 - 80 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 1926 0.71 0.802999
Target:  5'- uGGCGCUggG-CGCGgugCUGCCCgcgCGGUg -3'
miRNA:   3'- -CCGCGGuuUuGCGUg--GAUGGGa--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 205701 0.71 0.811557
Target:  5'- -cCGCUGuuGCGCGCCUggAgCCUCGGUu -3'
miRNA:   3'- ccGCGGUuuUGCGUGGA--UgGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 188465 0.78 0.441745
Target:  5'- aGGCGCgGAuAGCGCGCCUcGgCCUCGGg -3'
miRNA:   3'- -CCGCGgUU-UUGCGUGGA-UgGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 10194 0.76 0.514861
Target:  5'- cGGUGUCAuGAUaGCACCaguucUGCCCUCGGUg -3'
miRNA:   3'- -CCGCGGUuUUG-CGUGG-----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 71094 0.74 0.626075
Target:  5'- gGGCGCCGAcGCGCacACCUgcgaguaccugaucgACCgaCGGCg -3'
miRNA:   3'- -CCGCGGUUuUGCG--UGGA---------------UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 178158 0.74 0.675581
Target:  5'- cGCGUCAagcguaacguuaaaaAAGCGC-CCUGCCCUacgGGCa -3'
miRNA:   3'- cCGCGGU---------------UUUGCGuGGAUGGGAg--CCG- -5'
30243 3' -55.5 NC_006273.1 + 171756 0.73 0.691293
Target:  5'- uGCGCUAcgGAGCGCGCCaUGagCUCGGCc -3'
miRNA:   3'- cCGCGGU--UUUGCGUGG-AUggGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 87509 0.73 0.720406
Target:  5'- uGGCGCgaugcaCAGcACGCACCUcaGCCggCGGCa -3'
miRNA:   3'- -CCGCG------GUUuUGCGUGGA--UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 131039 0.72 0.776485
Target:  5'- cGCGCUAccuggccGCGCGCCaGCCCaucccccucUCGGCg -3'
miRNA:   3'- cCGCGGUuu-----UGCGUGGaUGGG---------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198757 0.72 0.780088
Target:  5'- uGCGCCuacguaGAGGCGCACCgcgaggcgcaacugACCCUCaucuGGCc -3'
miRNA:   3'- cCGCGG------UUUUGCGUGGa-------------UGGGAG----CCG- -5'
30243 3' -55.5 NC_006273.1 + 180087 0.69 0.894114
Target:  5'- aGGCGCacuuucuGGCGCGCggACuCCUgGGCu -3'
miRNA:   3'- -CCGCGguu----UUGCGUGgaUG-GGAgCCG- -5'
30243 3' -55.5 NC_006273.1 + 131100 0.69 0.894114
Target:  5'- --gGCCGAGACGCGgCcGCUCUacCGGCa -3'
miRNA:   3'- ccgCGGUUUUGCGUgGaUGGGA--GCCG- -5'
30243 3' -55.5 NC_006273.1 + 131867 0.7 0.835483
Target:  5'- cGGCgGCCGcaucGAcggcACGCACCUGgcgggcuUCUUCGGCa -3'
miRNA:   3'- -CCG-CGGU----UU----UGCGUGGAU-------GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 202037 0.7 0.836283
Target:  5'- cGCGCCGcagGAucgcACGCGgCUGCCgcaguucagCUCGGCg -3'
miRNA:   3'- cCGCGGU---UU----UGCGUgGAUGG---------GAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 83609 0.7 0.851906
Target:  5'- gGGCGCgCGcGACGCcgaacuguaccACCUGCCCguguuggaGGCc -3'
miRNA:   3'- -CCGCG-GUuUUGCG-----------UGGAUGGGag------CCG- -5'
30243 3' -55.5 NC_006273.1 + 108709 0.7 0.851906
Target:  5'- cGGCGCCuAAGACGUugaucgaguacaGCCUACCCg---- -3'
miRNA:   3'- -CCGCGG-UUUUGCG------------UGGAUGGGagccg -5'
30243 3' -55.5 NC_006273.1 + 152410 0.7 0.866056
Target:  5'- aGuCGCCAGGACGCugCUacucacgACCCgUGGUc -3'
miRNA:   3'- cC-GCGGUUUUGCGugGA-------UGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 85177 0.69 0.873924
Target:  5'- -cCGCCAgcGAGCGCACCcACUCgUCGcGCu -3'
miRNA:   3'- ccGCGGU--UUUGCGUGGaUGGG-AGC-CG- -5'
30243 3' -55.5 NC_006273.1 + 194827 0.69 0.880863
Target:  5'- gGGCGgCAAGGCgGUgguaggucgACC-GCCCUCGGUc -3'
miRNA:   3'- -CCGCgGUUUUG-CG---------UGGaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198827 0.69 0.887595
Target:  5'- uGCGCaCGGcGCGCgAUCUgggGCUCUCGGCc -3'
miRNA:   3'- cCGCG-GUUuUGCG-UGGA---UGGGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.