miRNA display CGI


Results 81 - 100 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 3' -55.5 NC_006273.1 + 40529 0.7 0.836283
Target:  5'- uGGCGCCGcAAGCGCuccGCCgcUUCUgCGGCu -3'
miRNA:   3'- -CCGCGGU-UUUGCG---UGGauGGGA-GCCG- -5'
30243 3' -55.5 NC_006273.1 + 186159 0.7 0.851906
Target:  5'- aGGUGCCAGAACGCAaagaguUCCUCGuacGCc -3'
miRNA:   3'- -CCGCGGUUUUGCGUggau--GGGAGC---CG- -5'
30243 3' -55.5 NC_006273.1 + 100255 0.7 0.851906
Target:  5'- cGCGaCCAGuuccaagcGGCGCggGCCUGacUCCUCGGCc -3'
miRNA:   3'- cCGC-GGUU--------UUGCG--UGGAU--GGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 133680 0.7 0.851906
Target:  5'- cGGCGCCGGuGACcCGCC--CCC-CGGCa -3'
miRNA:   3'- -CCGCGGUU-UUGcGUGGauGGGaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 169676 0.7 0.866056
Target:  5'- cGGCGCCGugGCcguugccgcguuaGCGCC-GCUUUCGGUa -3'
miRNA:   3'- -CCGCGGUuuUG-------------CGUGGaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 194827 0.69 0.880863
Target:  5'- gGGCGgCAAGGCgGUgguaggucgACC-GCCCUCGGUc -3'
miRNA:   3'- -CCGCgGUUUUG-CG---------UGGaUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198827 0.69 0.887595
Target:  5'- uGCGCaCGGcGCGCgAUCUgggGCUCUCGGCc -3'
miRNA:   3'- cCGCG-GUUuUGCG-UGGA---UGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 198757 0.72 0.780088
Target:  5'- uGCGCCuacguaGAGGCGCACCgcgaggcgcaacugACCCUCaucuGGCc -3'
miRNA:   3'- cCGCGG------UUUUGCGUGGa-------------UGGGAG----CCG- -5'
30243 3' -55.5 NC_006273.1 + 131039 0.72 0.776485
Target:  5'- cGCGCUAccuggccGCGCGCCaGCCCaucccccucUCGGCg -3'
miRNA:   3'- cCGCGGUuu-----UGCGUGGaUGGG---------AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 87509 0.73 0.720406
Target:  5'- uGGCGCgaugcaCAGcACGCACCUcaGCCggCGGCa -3'
miRNA:   3'- -CCGCG------GUUuUGCGUGGA--UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 113564 0.69 0.906505
Target:  5'- aGCaUCAAcgUGCACCacUACCCgUCGGCg -3'
miRNA:   3'- cCGcGGUUuuGCGUGG--AUGGG-AGCCG- -5'
30243 3' -55.5 NC_006273.1 + 206640 0.68 0.91237
Target:  5'- cGUGCCGucuGAACuGUACCUggGCgCCUCGGg -3'
miRNA:   3'- cCGCGGU---UUUG-CGUGGA--UG-GGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 38620 0.68 0.918013
Target:  5'- aGGUGCCG--ACGCACg-GCCgUCaGCa -3'
miRNA:   3'- -CCGCGGUuuUGCGUGgaUGGgAGcCG- -5'
30243 3' -55.5 NC_006273.1 + 38773 0.68 0.922366
Target:  5'- cGGCGCagcucccguccGAGCGCcgucGCCU--CCUCGGCg -3'
miRNA:   3'- -CCGCGgu---------UUUGCG----UGGAugGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 4939 0.68 0.923431
Target:  5'- cGCcCCGAGGCGCugCUcugaagccaaguGCCgaCGGCg -3'
miRNA:   3'- cCGcGGUUUUGCGugGA------------UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 188465 0.78 0.441745
Target:  5'- aGGCGCgGAuAGCGCGCCUcGgCCUCGGg -3'
miRNA:   3'- -CCGCGgUU-UUGCGUGGA-UgGGAGCCg -5'
30243 3' -55.5 NC_006273.1 + 10194 0.76 0.514861
Target:  5'- cGGUGUCAuGAUaGCACCaguucUGCCCUCGGUg -3'
miRNA:   3'- -CCGCGGUuUUG-CGUGG-----AUGGGAGCCG- -5'
30243 3' -55.5 NC_006273.1 + 71094 0.74 0.626075
Target:  5'- gGGCGCCGAcGCGCacACCUgcgaguaccugaucgACCgaCGGCg -3'
miRNA:   3'- -CCGCGGUUuUGCG--UGGA---------------UGGgaGCCG- -5'
30243 3' -55.5 NC_006273.1 + 178158 0.74 0.675581
Target:  5'- cGCGUCAagcguaacguuaaaaAAGCGC-CCUGCCCUacgGGCa -3'
miRNA:   3'- cCGCGGU---------------UUUGCGuGGAUGGGAg--CCG- -5'
30243 3' -55.5 NC_006273.1 + 171756 0.73 0.691293
Target:  5'- uGCGCUAcgGAGCGCGCCaUGagCUCGGCc -3'
miRNA:   3'- cCGCGGU--UUUGCGUGG-AUggGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.