miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 5' -56.9 NC_006273.1 + 149564 0.66 0.940637
Target:  5'- ---aACGGUGGCgGCGgcCGGGCCCgUGGa -3'
miRNA:   3'- gacgUGCUACCGgCGU--GUCUGGG-AUC- -5'
30243 5' -56.9 NC_006273.1 + 15697 0.66 0.940637
Target:  5'- -cGCGCGA-GGgCGCAgAGcgggugauuaccGCCCUGGu -3'
miRNA:   3'- gaCGUGCUaCCgGCGUgUC------------UGGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 152523 0.66 0.931126
Target:  5'- -gGCGCGuUGGCuaugCGCACGGcGCCCa-- -3'
miRNA:   3'- gaCGUGCuACCG----GCGUGUC-UGGGauc -5'
30243 5' -56.9 NC_006273.1 + 17402 0.66 0.931126
Target:  5'- -cGCGCGuAUGGCCGC-CGG-CCacgAGa -3'
miRNA:   3'- gaCGUGC-UACCGGCGuGUCuGGga-UC- -5'
30243 5' -56.9 NC_006273.1 + 74431 0.66 0.931126
Target:  5'- -cGC-CGcGUGGCCuGCAcCAGAUCCUGa -3'
miRNA:   3'- gaCGuGC-UACCGG-CGU-GUCUGGGAUc -5'
30243 5' -56.9 NC_006273.1 + 216854 0.66 0.928097
Target:  5'- -gGCAUG-UGGUcaaaaggccggcaggCGCGCAGGCCCUc- -3'
miRNA:   3'- gaCGUGCuACCG---------------GCGUGUCUGGGAuc -5'
30243 5' -56.9 NC_006273.1 + 204005 0.66 0.926033
Target:  5'- -gGCGCGGU-GCCGaccuCGGACCCaGGg -3'
miRNA:   3'- gaCGUGCUAcCGGCgu--GUCUGGGaUC- -5'
30243 5' -56.9 NC_006273.1 + 204172 0.66 0.920713
Target:  5'- -cGCACGGUGGuCCGUAU-GGCCUc-- -3'
miRNA:   3'- gaCGUGCUACC-GGCGUGuCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 71495 0.66 0.915169
Target:  5'- -aGCAUGGUGGCCaGCACcggguggguGGCCuCUGa -3'
miRNA:   3'- gaCGUGCUACCGG-CGUGu--------CUGG-GAUc -5'
30243 5' -56.9 NC_006273.1 + 73461 0.66 0.915169
Target:  5'- gCUGCAUaAUGGuaGCGCAGAgCCa-- -3'
miRNA:   3'- -GACGUGcUACCggCGUGUCUgGGauc -5'
30243 5' -56.9 NC_006273.1 + 1291 0.67 0.9094
Target:  5'- gCUGCcgcuCGGacGGCCGUACGGAUUCUAc -3'
miRNA:   3'- -GACGu---GCUa-CCGGCGUGUCUGGGAUc -5'
30243 5' -56.9 NC_006273.1 + 168204 0.67 0.9094
Target:  5'- uCUGCGCGuacguggcguUGGCgGCacGCAGAUCCUc- -3'
miRNA:   3'- -GACGUGCu---------ACCGgCG--UGUCUGGGAuc -5'
30243 5' -56.9 NC_006273.1 + 196184 0.67 0.9094
Target:  5'- gCUGCcgcuCGGacGGCCGUACGGAUUCUAc -3'
miRNA:   3'- -GACGu---GCUa-CCGGCGUGUCUGGGAUc -5'
30243 5' -56.9 NC_006273.1 + 222183 0.67 0.9094
Target:  5'- gCUGUAac---GCCGCACGGGCCCgUAGc -3'
miRNA:   3'- -GACGUgcuacCGGCGUGUCUGGG-AUC- -5'
30243 5' -56.9 NC_006273.1 + 72423 0.67 0.903409
Target:  5'- -cGCGCGucucGUCGUGCAGACCCa-- -3'
miRNA:   3'- gaCGUGCuac-CGGCGUGUCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 140366 0.67 0.903409
Target:  5'- -gGuCACGAcUGGCgGC-CGGACCCUcgAGa -3'
miRNA:   3'- gaC-GUGCU-ACCGgCGuGUCUGGGA--UC- -5'
30243 5' -56.9 NC_006273.1 + 181261 0.67 0.903409
Target:  5'- uUGCGCGGuuaUGGCUcCGCGGACUUUAa -3'
miRNA:   3'- gACGUGCU---ACCGGcGUGUCUGGGAUc -5'
30243 5' -56.9 NC_006273.1 + 197758 0.67 0.897198
Target:  5'- uUGcCGCGcgGGUCGCguguugACGGACCCg-- -3'
miRNA:   3'- gAC-GUGCuaCCGGCG------UGUCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 131848 0.67 0.897198
Target:  5'- gCUGCACGGUcgagagaagcGGCUGCAguUGGACCgcCUAGu -3'
miRNA:   3'- -GACGUGCUA----------CCGGCGU--GUCUGG--GAUC- -5'
30243 5' -56.9 NC_006273.1 + 2516 0.67 0.897198
Target:  5'- -cGCGCGA--GCCGCACGGGCagUUAGc -3'
miRNA:   3'- gaCGUGCUacCGGCGUGUCUGg-GAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.