miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 5' -56.9 NC_006273.1 + 227018 1.08 0.004067
Target:  5'- aCUGCACGAUGGCCGCACAGACCCUAGc -3'
miRNA:   3'- -GACGUGCUACCGGCGUGUCUGGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 186552 0.74 0.536802
Target:  5'- -cGCACcuGUGGCCGCAggagcuuCAGGCCCUGu -3'
miRNA:   3'- gaCGUGc-UACCGGCGU-------GUCUGGGAUc -5'
30243 5' -56.9 NC_006273.1 + 18984 0.74 0.537766
Target:  5'- -aGCGCcuggGGCCGCACGGACCUa-- -3'
miRNA:   3'- gaCGUGcua-CCGGCGUGUCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 8016 0.73 0.566933
Target:  5'- aCUG-ACGGUGGCgGCgGCAGACCCa-- -3'
miRNA:   3'- -GACgUGCUACCGgCG-UGUCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 144097 0.73 0.606396
Target:  5'- -cGCGCG-UGGCCGCGCuGGCUCg-- -3'
miRNA:   3'- gaCGUGCuACCGGCGUGuCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 205621 0.72 0.645151
Target:  5'- -cGCGCGucgGGCUGCGCgccgucgAGACCCUGc -3'
miRNA:   3'- gaCGUGCua-CCGGCGUG-------UCUGGGAUc -5'
30243 5' -56.9 NC_006273.1 + 173803 0.72 0.646145
Target:  5'- -cGCGCGGUggccaaacGGCCGCGC-GACCCg-- -3'
miRNA:   3'- gaCGUGCUA--------CCGGCGUGuCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 49060 0.72 0.675871
Target:  5'- -cGCACGAUGGCCuCACGccGGCCgCUGa -3'
miRNA:   3'- gaCGUGCUACCGGcGUGU--CUGG-GAUc -5'
30243 5' -56.9 NC_006273.1 + 5624 0.71 0.733236
Target:  5'- uUGCGCGGUGggggcguGCCcCGCAGACCCcGGu -3'
miRNA:   3'- gACGUGCUAC-------CGGcGUGUCUGGGaUC- -5'
30243 5' -56.9 NC_006273.1 + 141796 0.71 0.734188
Target:  5'- -aGcCGCGGUacaGGCCGCGCAGGCCg--- -3'
miRNA:   3'- gaC-GUGCUA---CCGGCGUGUCUGGgauc -5'
30243 5' -56.9 NC_006273.1 + 141272 0.7 0.771506
Target:  5'- -gGCACGG-GGCuCGCGCu--CCCUAGg -3'
miRNA:   3'- gaCGUGCUaCCG-GCGUGucuGGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 23434 0.7 0.771506
Target:  5'- -aGCACcGUGGCCGUGCAgGGCaCCUGc -3'
miRNA:   3'- gaCGUGcUACCGGCGUGU-CUG-GGAUc -5'
30243 5' -56.9 NC_006273.1 + 152975 0.7 0.780563
Target:  5'- -aGCACGcacgGGUCGCGCAG-CaCCUGGu -3'
miRNA:   3'- gaCGUGCua--CCGGCGUGUCuG-GGAUC- -5'
30243 5' -56.9 NC_006273.1 + 2361 0.69 0.789494
Target:  5'- uCUGCGCGcgGGCgugcugggCGCGCuGGCgCUGGg -3'
miRNA:   3'- -GACGUGCuaCCG--------GCGUGuCUGgGAUC- -5'
30243 5' -56.9 NC_006273.1 + 197254 0.69 0.789494
Target:  5'- uCUGCGCGcgGGCgugcugggCGCGCuGGCgCUGGg -3'
miRNA:   3'- -GACGUGCuaCCG--------GCGUGuCUGgGAUC- -5'
30243 5' -56.9 NC_006273.1 + 146649 0.69 0.798292
Target:  5'- aCUGCACGAUgggguagaugaGGCCGCAgAGuCCaaAGa -3'
miRNA:   3'- -GACGUGCUA-----------CCGGCGUgUCuGGgaUC- -5'
30243 5' -56.9 NC_006273.1 + 141767 0.69 0.798292
Target:  5'- aUGCGCGAa-GCUGCGCAGGCCg--- -3'
miRNA:   3'- gACGUGCUacCGGCGUGUCUGGgauc -5'
30243 5' -56.9 NC_006273.1 + 197409 0.69 0.806948
Target:  5'- -cGCGCGA--GCCGCACGGGCagUGGg -3'
miRNA:   3'- gaCGUGCUacCGGCGUGUCUGggAUC- -5'
30243 5' -56.9 NC_006273.1 + 213547 0.69 0.815454
Target:  5'- -cGCACGAgGGCa--GCAGACCCgAGg -3'
miRNA:   3'- gaCGUGCUaCCGgcgUGUCUGGGaUC- -5'
30243 5' -56.9 NC_006273.1 + 141282 0.69 0.815454
Target:  5'- aUGCGUG-UGGCCGCucgggaACAGACCCg-- -3'
miRNA:   3'- gACGUGCuACCGGCG------UGUCUGGGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.