miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30243 5' -56.9 NC_006273.1 + 65563 0.67 0.890768
Target:  5'- gCUGCgGCGAaggGGCCcUGCcGGCCCUGGg -3'
miRNA:   3'- -GACG-UGCUa--CCGGcGUGuCUGGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 111965 0.68 0.852448
Target:  5'- -cGCGCGGUGGCggucaagucuggaGCGUAGugCCUAGu -3'
miRNA:   3'- gaCGUGCUACCGg------------CGUGUCugGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 211058 0.68 0.855486
Target:  5'- -gGuCGCGGUGGgaaaGCGCAGACCCa-- -3'
miRNA:   3'- gaC-GUGCUACCgg--CGUGUCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 55672 0.68 0.855486
Target:  5'- -gGCGCGua-GuuGCGCAGGCCCUc- -3'
miRNA:   3'- gaCGUGCuacCggCGUGUCUGGGAuc -5'
30243 5' -56.9 NC_006273.1 + 34716 0.68 0.862945
Target:  5'- -cGC-CGgcGGCCGC-CAGAUCCUcGGg -3'
miRNA:   3'- gaCGuGCuaCCGGCGuGUCUGGGA-UC- -5'
30243 5' -56.9 NC_006273.1 + 32883 0.68 0.877269
Target:  5'- -aGUcCGAUGGUgccgaugaCGCGCAacuGACCCUGGg -3'
miRNA:   3'- gaCGuGCUACCG--------GCGUGU---CUGGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 125818 0.68 0.877269
Target:  5'- gCUuCGCGAUGGUCGUAgAuGGCCUUGGu -3'
miRNA:   3'- -GAcGUGCUACCGGCGUgU-CUGGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 139011 0.68 0.877269
Target:  5'- -aGCACGcgauUGGCCaGCACggGGAUCUUGGu -3'
miRNA:   3'- gaCGUGCu---ACCGG-CGUG--UCUGGGAUC- -5'
30243 5' -56.9 NC_006273.1 + 33823 0.67 0.884124
Target:  5'- -cGCgACGcgGGuuGgCACAGGCCCa-- -3'
miRNA:   3'- gaCG-UGCuaCCggC-GUGUCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 84737 0.68 0.847836
Target:  5'- -gGCGCGucGUGGUCucuugcguguuGCGCGGACCCUccGGg -3'
miRNA:   3'- gaCGUGC--UACCGG-----------CGUGUCUGGGA--UC- -5'
30243 5' -56.9 NC_006273.1 + 36732 0.69 0.823803
Target:  5'- -cGCGCGAgcGGCgGCACAGcucgGCCCg-- -3'
miRNA:   3'- gaCGUGCUa-CCGgCGUGUC----UGGGauc -5'
30243 5' -56.9 NC_006273.1 + 141282 0.69 0.815454
Target:  5'- aUGCGUG-UGGCCGCucgggaACAGACCCg-- -3'
miRNA:   3'- gACGUGCuACCGGCG------UGUCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 144097 0.73 0.606396
Target:  5'- -cGCGCG-UGGCCGCGCuGGCUCg-- -3'
miRNA:   3'- gaCGUGCuACCGGCGUGuCUGGGauc -5'
30243 5' -56.9 NC_006273.1 + 49060 0.72 0.675871
Target:  5'- -cGCACGAUGGCCuCACGccGGCCgCUGa -3'
miRNA:   3'- gaCGUGCUACCGGcGUGU--CUGG-GAUc -5'
30243 5' -56.9 NC_006273.1 + 141796 0.71 0.734188
Target:  5'- -aGcCGCGGUacaGGCCGCGCAGGCCg--- -3'
miRNA:   3'- gaC-GUGCUA---CCGGCGUGUCUGGgauc -5'
30243 5' -56.9 NC_006273.1 + 152975 0.7 0.780563
Target:  5'- -aGCACGcacgGGUCGCGCAG-CaCCUGGu -3'
miRNA:   3'- gaCGUGCua--CCGGCGUGUCuG-GGAUC- -5'
30243 5' -56.9 NC_006273.1 + 197254 0.69 0.789494
Target:  5'- uCUGCGCGcgGGCgugcugggCGCGCuGGCgCUGGg -3'
miRNA:   3'- -GACGUGCuaCCG--------GCGUGuCUGgGAUC- -5'
30243 5' -56.9 NC_006273.1 + 146649 0.69 0.798292
Target:  5'- aCUGCACGAUgggguagaugaGGCCGCAgAGuCCaaAGa -3'
miRNA:   3'- -GACGUGCUA-----------CCGGCGUgUCuGGgaUC- -5'
30243 5' -56.9 NC_006273.1 + 141767 0.69 0.798292
Target:  5'- aUGCGCGAa-GCUGCGCAGGCCg--- -3'
miRNA:   3'- gACGUGCUacCGGCGUGUCUGGgauc -5'
30243 5' -56.9 NC_006273.1 + 197409 0.69 0.806948
Target:  5'- -cGCGCGA--GCCGCACGGGCagUGGg -3'
miRNA:   3'- gaCGUGCUacCGGCGUGUCUGggAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.