miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30244 3' -59.3 NC_006273.1 + 34243 0.66 0.872762
Target:  5'- --cAGG-GCcGCCGGCaggCA-GCGGCCg -3'
miRNA:   3'- ucuUCCuCGaUGGCCGa--GUcCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 145396 0.66 0.872762
Target:  5'- gGGcuGcGAGUUGCUGGC-C-GGCGGUCg -3'
miRNA:   3'- -UCuuC-CUCGAUGGCCGaGuCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 196169 0.66 0.872762
Target:  5'- cGAcgcGGGcacgcuGCUGCC-GCUCGGaCGGCCg -3'
miRNA:   3'- uCU---UCCu-----CGAUGGcCGAGUCcGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 1276 0.66 0.872762
Target:  5'- cGAcgcGGGcacgcuGCUGCC-GCUCGGaCGGCCg -3'
miRNA:   3'- uCU---UCCu-----CGAUGGcCGAGUCcGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 132392 0.66 0.865698
Target:  5'- cGGAGGAGCguccgacGCCGGgUUGGcacgacGCGGCg -3'
miRNA:   3'- uCUUCCUCGa------UGGCCgAGUC------CGCCGg -5'
30244 3' -59.3 NC_006273.1 + 87441 0.66 0.861367
Target:  5'- cGAcGGGGGCUcggagaugACCGGCugugucugacacuccUCcccuuccucAGGCGGCCc -3'
miRNA:   3'- uCU-UCCUCGA--------UGGCCG---------------AG---------UCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 80380 0.66 0.858442
Target:  5'- aAGcGGGAGCgg-CGGC-CGuGGCGGCg -3'
miRNA:   3'- -UCuUCCUCGaugGCCGaGU-CCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 104866 0.66 0.858442
Target:  5'- cGGAGG-GCUguuugccucacACgCGGC-C-GGCGGCCg -3'
miRNA:   3'- uCUUCCuCGA-----------UG-GCCGaGuCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 140623 0.66 0.858442
Target:  5'- cGGAGGGGCccaaaaGCCaGCg-GGGCgGGCCg -3'
miRNA:   3'- uCUUCCUCGa-----UGGcCGagUCCG-CCGG- -5'
30244 3' -59.3 NC_006273.1 + 115166 0.66 0.856229
Target:  5'- --cAGGuGCU-UCGGCUCaucaccaacguggaAGGCGGCUc -3'
miRNA:   3'- ucuUCCuCGAuGGCCGAG--------------UCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 144206 0.66 0.851
Target:  5'- cGAGcGGuGCgacgACCGGCac-GGCGGCUc -3'
miRNA:   3'- uCUU-CCuCGa---UGGCCGaguCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 40397 0.66 0.851
Target:  5'- uGGAGGGGGa----GGCcaCAGGCGGCg -3'
miRNA:   3'- -UCUUCCUCgauggCCGa-GUCCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 157012 0.66 0.846447
Target:  5'- gAGGAGGAGa-GCCGGCaaagaagaGGGCgcggaaaccaccgucGGCCg -3'
miRNA:   3'- -UCUUCCUCgaUGGCCGag------UCCG---------------CCGG- -5'
30244 3' -59.3 NC_006273.1 + 140844 0.66 0.845682
Target:  5'- gGGGAGGAGCgggGugggggugggaagccCCcGCUCGGGUccccccgGGCCg -3'
miRNA:   3'- -UCUUCCUCGa--U---------------GGcCGAGUCCG-------CCGG- -5'
30244 3' -59.3 NC_006273.1 + 42217 0.66 0.843377
Target:  5'- cGAAcGGGCaGCgugGGCUUcGGCGGCCg -3'
miRNA:   3'- uCUUcCUCGaUGg--CCGAGuCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 164225 0.66 0.843377
Target:  5'- cGGguGGuGUUGCgCGGCgaCGGGUGGCa -3'
miRNA:   3'- -UCuuCCuCGAUG-GCCGa-GUCCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 118078 0.66 0.843377
Target:  5'- aAGAAcGGAcgGCgacGCUGGaagcgCAGGCGGCUg -3'
miRNA:   3'- -UCUU-CCU--CGa--UGGCCga---GUCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 84153 0.66 0.835579
Target:  5'- cAGAcgAGGAGCgGCgCGGCcCAGaGCgugucGGCCg -3'
miRNA:   3'- -UCU--UCCUCGaUG-GCCGaGUC-CG-----CCGG- -5'
30244 3' -59.3 NC_006273.1 + 31727 0.67 0.827613
Target:  5'- gAGAAaGGGaUAgUGGCUCGGGuCGGCUg -3'
miRNA:   3'- -UCUUcCUCgAUgGCCGAGUCC-GCCGG- -5'
30244 3' -59.3 NC_006273.1 + 133766 0.67 0.827613
Target:  5'- ---uGGAGCUGCa--CUCAcGCGGCCg -3'
miRNA:   3'- ucuuCCUCGAUGgccGAGUcCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.