miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30244 3' -59.3 NC_006273.1 + 227412 1.11 0.00167
Target:  5'- aAGAAGGAGCUACCGGCUCAGGCGGCCu -3'
miRNA:   3'- -UCUUCCUCGAUGGCCGAGUCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 161758 0.85 0.091261
Target:  5'- gAGGAGGAGUUGCUGGCUCuggcgggagaagggaAGGCGGCa -3'
miRNA:   3'- -UCUUCCUCGAUGGCCGAG---------------UCCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 163125 0.82 0.148753
Target:  5'- gAGGAGG-GCU-CCGGCUgAGGCGGCg -3'
miRNA:   3'- -UCUUCCuCGAuGGCCGAgUCCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 189049 0.81 0.156199
Target:  5'- uGGuGGGGGCccggACCGGCggcgUAGGCGGCCg -3'
miRNA:   3'- -UCuUCCUCGa---UGGCCGa---GUCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 131851 0.78 0.250896
Target:  5'- ---uGGGGCUgGCCGGCUacGGCGGCCg -3'
miRNA:   3'- ucuuCCUCGA-UGGCCGAguCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 92730 0.77 0.293829
Target:  5'- cGAAGGAGCc-CUGGCcCAGGCGGUa -3'
miRNA:   3'- uCUUCCUCGauGGCCGaGUCCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 177528 0.77 0.30041
Target:  5'- --cGGGGGCccGCUGGCUCGGcGCGGCUg -3'
miRNA:   3'- ucuUCCUCGa-UGGCCGAGUC-CGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 118152 0.76 0.335018
Target:  5'- aAGAGGGAacgcgcgccccaGCcGCCGGCgu-GGCGGCCu -3'
miRNA:   3'- -UCUUCCU------------CGaUGGCCGaguCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 45575 0.75 0.396238
Target:  5'- gAGgcGGuacaAGCUGCCGug-CAGGCGGCCa -3'
miRNA:   3'- -UCuuCC----UCGAUGGCcgaGUCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 36742 0.75 0.396238
Target:  5'- cGucGGAGCUcagACCgGGCUCcggcGGGUGGCCu -3'
miRNA:   3'- uCuuCCUCGA---UGG-CCGAG----UCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 178650 0.74 0.404382
Target:  5'- uGGGAGGAGgUGgCGGCgguGGCGGCa -3'
miRNA:   3'- -UCUUCCUCgAUgGCCGaguCCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 48348 0.74 0.446636
Target:  5'- -uGAGGAGUccCUGGCgaUCAGGCGGCUc -3'
miRNA:   3'- ucUUCCUCGauGGCCG--AGUCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 8837 0.73 0.473136
Target:  5'- cGAcGGcGgaGCCGGCUCAGaGCGGaCCa -3'
miRNA:   3'- uCUuCCuCgaUGGCCGAGUC-CGCC-GG- -5'
30244 3' -59.3 NC_006273.1 + 71859 0.73 0.491236
Target:  5'- gGGGAGGAGCaGCUGGUguuUCGacugcGGCGGCa -3'
miRNA:   3'- -UCUUCCUCGaUGGCCG---AGU-----CCGCCGg -5'
30244 3' -59.3 NC_006273.1 + 196621 0.73 0.491236
Target:  5'- cGGAcGGGAGCUgcGCCGGCggUGGGcCGGCa -3'
miRNA:   3'- -UCU-UCCUCGA--UGGCCGa-GUCC-GCCGg -5'
30244 3' -59.3 NC_006273.1 + 1729 0.73 0.491236
Target:  5'- cGGAcGGGAGCUgcGCCGGCggUGGGcCGGCa -3'
miRNA:   3'- -UCU-UCCUCGA--UGGCCGa-GUCC-GCCGg -5'
30244 3' -59.3 NC_006273.1 + 151678 0.73 0.500406
Target:  5'- gAGAAGaAGCUGuuGGCcaCAGGCGGUUg -3'
miRNA:   3'- -UCUUCcUCGAUggCCGa-GUCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 68029 0.72 0.518965
Target:  5'- cGGAGGA-CUGCCGGCaggugUGGGCucGGCCa -3'
miRNA:   3'- uCUUCCUcGAUGGCCGa----GUCCG--CCGG- -5'
30244 3' -59.3 NC_006273.1 + 202547 0.72 0.528347
Target:  5'- gGGAccGcAGCgugGCCGGCgu-GGCGGCCg -3'
miRNA:   3'- -UCUucC-UCGa--UGGCCGaguCCGCCGG- -5'
30244 3' -59.3 NC_006273.1 + 143906 0.72 0.537791
Target:  5'- -uGAGGAGCUcacCCGGCUgCuGGCGGUUu -3'
miRNA:   3'- ucUUCCUCGAu--GGCCGA-GuCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.