miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30244 5' -57 NC_006273.1 + 34054 0.66 0.934393
Target:  5'- -gGGCgACaaagaggagUGGUCGCcGCCGCCGUa -3'
miRNA:   3'- gaCUGgUGg--------ACCAGUGaUGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 21222 0.66 0.934393
Target:  5'- gCUG-CCGCCgcuGUgGCUGCCGCUGc- -3'
miRNA:   3'- -GACuGGUGGac-CAgUGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 140358 0.66 0.934393
Target:  5'- -gGACC-CCcGGUCACgacugGCgGCCGg- -3'
miRNA:   3'- gaCUGGuGGaCCAGUGa----UGgCGGCaa -5'
30244 5' -57 NC_006273.1 + 49529 0.66 0.929442
Target:  5'- gUGGCaagACgaGGUCAuCUACCGUCGUc -3'
miRNA:   3'- gACUGg--UGgaCCAGU-GAUGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 73894 0.66 0.929442
Target:  5'- --cGCCACagagaUGGacCACUGCCGCUGUg -3'
miRNA:   3'- gacUGGUGg----ACCa-GUGAUGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 14658 0.66 0.924266
Target:  5'- -cGAUCACCaugauggcaUGGUgGCUACC-CCGUa -3'
miRNA:   3'- gaCUGGUGG---------ACCAgUGAUGGcGGCAa -5'
30244 5' -57 NC_006273.1 + 197108 0.66 0.924266
Target:  5'- -gGGCUugucccccauaAUCUGGUCGCcgccACCGCCGUc -3'
miRNA:   3'- gaCUGG-----------UGGACCAGUGa---UGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 189886 0.66 0.918863
Target:  5'- -gGACCGCCgGG-CAUcGCCGUCGg- -3'
miRNA:   3'- gaCUGGUGGaCCaGUGaUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 73593 0.66 0.918863
Target:  5'- cCUGGcCCGCCgcuGcCGCUGCCGCCu-- -3'
miRNA:   3'- -GACU-GGUGGac-CaGUGAUGGCGGcaa -5'
30244 5' -57 NC_006273.1 + 83381 0.66 0.918863
Target:  5'- -gGGCCACgUcGGgcuGCUGCCGCCGc- -3'
miRNA:   3'- gaCUGGUGgA-CCag-UGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 60181 0.66 0.91831
Target:  5'- aCUGuCCAgcuccauCCUGGUCGC-GCCgGCCGg- -3'
miRNA:   3'- -GACuGGU-------GGACCAGUGaUGG-CGGCaa -5'
30244 5' -57 NC_006273.1 + 204691 0.66 0.913234
Target:  5'- -gGACCACa-GGaUCAUaGCCGCCGg- -3'
miRNA:   3'- gaCUGGUGgaCC-AGUGaUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 104790 0.66 0.913234
Target:  5'- gUGaACCACCUGcugaaGCUGCUGCCGc- -3'
miRNA:   3'- gAC-UGGUGGACcag--UGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 68863 0.66 0.913234
Target:  5'- -cGACCACCguuaccaGUaccacCGCUGCCGCCGc- -3'
miRNA:   3'- gaCUGGUGGac-----CA-----GUGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 120608 0.66 0.913234
Target:  5'- -gGACCagACgUGGUCGCgccgAUCGCUGUa -3'
miRNA:   3'- gaCUGG--UGgACCAGUGa---UGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 159901 0.66 0.911502
Target:  5'- -cGGCCGaagcgccggcggguCCUGcGUUGCUACUGCCGg- -3'
miRNA:   3'- gaCUGGU--------------GGAC-CAGUGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 197913 0.67 0.907381
Target:  5'- -aGGCCACCaGGUCAUc-CCGuuGUg -3'
miRNA:   3'- gaCUGGUGGaCCAGUGauGGCggCAa -5'
30244 5' -57 NC_006273.1 + 227687 0.67 0.907381
Target:  5'- --cGCUGCCgcGGcCACUGCCGCCGc- -3'
miRNA:   3'- gacUGGUGGa-CCaGUGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 198729 0.67 0.907381
Target:  5'- gCUGGCCugCgaGGaCACcGCCGCuCGUUg -3'
miRNA:   3'- -GACUGGugGa-CCaGUGaUGGCG-GCAA- -5'
30244 5' -57 NC_006273.1 + 118434 0.67 0.907381
Target:  5'- aCUGugCACgUagcccGUCACggucgGCCGCCGUg -3'
miRNA:   3'- -GACugGUGgAc----CAGUGa----UGGCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.