miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30244 5' -57 NC_006273.1 + 205269 0.67 0.901306
Target:  5'- uCUGGCUAgCCUGG-CGCUcACgGCCGa- -3'
miRNA:   3'- -GACUGGU-GGACCaGUGA-UGgCGGCaa -5'
30244 5' -57 NC_006273.1 + 101700 0.67 0.89501
Target:  5'- -aGACCGCUgccggggggcgGGUCACcGgCGCCGUg -3'
miRNA:   3'- gaCUGGUGGa----------CCAGUGaUgGCGGCAa -5'
30244 5' -57 NC_006273.1 + 113394 0.67 0.88177
Target:  5'- cCUGACCuGCCUGGcuggC-CUGCUGuuGUUg -3'
miRNA:   3'- -GACUGG-UGGACCa---GuGAUGGCggCAA- -5'
30244 5' -57 NC_006273.1 + 117544 0.67 0.88177
Target:  5'- aCUGACCAC--GGUgACcACCGUCGUa -3'
miRNA:   3'- -GACUGGUGgaCCAgUGaUGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 102566 0.67 0.88177
Target:  5'- -cGGCCAaauaacgugUCUGGggccggUGCUGCCGCCGUc -3'
miRNA:   3'- gaCUGGU---------GGACCa-----GUGAUGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 1922 0.67 0.874833
Target:  5'- uCUGGCgucagCACCUGGUUuuuuuACUcggaggccacgGCCGCCGUg -3'
miRNA:   3'- -GACUG-----GUGGACCAG-----UGA-----------UGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 190759 0.67 0.874833
Target:  5'- uCUGGCCGCCUuucCACgUACCGCUGg- -3'
miRNA:   3'- -GACUGGUGGAccaGUG-AUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 198645 0.68 0.860348
Target:  5'- -cGACCAUCgGGccgagCugUGCCGCCGc- -3'
miRNA:   3'- gaCUGGUGGaCCa----GugAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 164585 0.68 0.860348
Target:  5'- -aGGCCG-CUGG-CGCUGCCGUCGc- -3'
miRNA:   3'- gaCUGGUgGACCaGUGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 99588 0.68 0.860348
Target:  5'- -gGGCUgcuuguggggaACCUGGgguggACUGCCGCCGUg -3'
miRNA:   3'- gaCUGG-----------UGGACCag---UGAUGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 43256 0.68 0.85128
Target:  5'- gCUGuaGCCGCCUGGgacuugucuagcCGCUGCCGCuccCGUUg -3'
miRNA:   3'- -GAC--UGGUGGACCa-----------GUGAUGGCG---GCAA- -5'
30244 5' -57 NC_006273.1 + 138026 0.68 0.840359
Target:  5'- gUGACgcuaggcggcgccggCGCCUGGUUGCUGCCGCg--- -3'
miRNA:   3'- gACUG---------------GUGGACCAGUGAUGGCGgcaa -5'
30244 5' -57 NC_006273.1 + 182445 0.68 0.837173
Target:  5'- gCUGGCCuuUUGGUacuuuaGCUACCGCUGg- -3'
miRNA:   3'- -GACUGGugGACCAg-----UGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 68062 0.69 0.803839
Target:  5'- --cGCCGCCgUGGccgcCGCUGCCGCCGc- -3'
miRNA:   3'- gacUGGUGG-ACCa---GUGAUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 88358 0.69 0.795119
Target:  5'- aUGAUCGCCU--UCAUgGCCGCCGUa -3'
miRNA:   3'- gACUGGUGGAccAGUGaUGGCGGCAa -5'
30244 5' -57 NC_006273.1 + 81797 0.7 0.777268
Target:  5'- -cGcACCGCC-GGUCAC-GCCGCCGc- -3'
miRNA:   3'- gaC-UGGUGGaCCAGUGaUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 191431 0.7 0.777268
Target:  5'- -aGAUCGCCUGGgCGCUGCUGuuGc- -3'
miRNA:   3'- gaCUGGUGGACCaGUGAUGGCggCaa -5'
30244 5' -57 NC_006273.1 + 106067 0.7 0.768155
Target:  5'- uUGACCACC--GUCACgccgGCCGCgGUa -3'
miRNA:   3'- gACUGGUGGacCAGUGa---UGGCGgCAa -5'
30244 5' -57 NC_006273.1 + 124026 0.7 0.730638
Target:  5'- --cACCACCUGGaUCAC-GCCGCUGa- -3'
miRNA:   3'- gacUGGUGGACC-AGUGaUGGCGGCaa -5'
30244 5' -57 NC_006273.1 + 146498 0.7 0.730638
Target:  5'- gUGGCCagcGCCUGGUacuugaCACUGCCGCUa-- -3'
miRNA:   3'- gACUGG---UGGACCA------GUGAUGGCGGcaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.