miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 3' -49.1 NC_006273.1 + 215981 0.65 0.999845
Target:  5'- uUUgGGGGAUGagcacgaUGCCGUgcuugUCaUGCUGCCa -3'
miRNA:   3'- -AAgUCCUUAC-------AUGGCA-----AGaAUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 39038 0.66 0.999807
Target:  5'- cUCGGGAug--GCCGgcCUUGUCGCCc -3'
miRNA:   3'- aAGUCCUuacaUGGCaaGAAUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 51730 0.66 0.999807
Target:  5'- cUCAGG-AUGgcaagACCG-UCUaaauuacACCGCCa -3'
miRNA:   3'- aAGUCCuUACa----UGGCaAGAa------UGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 233931 0.66 0.999807
Target:  5'- cUCGGGAug--GCCGgcCUUGUCGCCc -3'
miRNA:   3'- aAGUCCUuacaUGGCaaGAAUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 86891 0.66 0.999807
Target:  5'- --gAGGAcgGUACgGUagaagGCCGCCc -3'
miRNA:   3'- aagUCCUuaCAUGgCAagaa-UGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 37270 0.66 0.999755
Target:  5'- --gAGGAAgacGCCGUg---GCCGCCg -3'
miRNA:   3'- aagUCCUUacaUGGCAagaaUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 186016 0.66 0.999717
Target:  5'- -gCAGGGcacuaccgccgcUGCCGUUUUUugCGCCg -3'
miRNA:   3'- aaGUCCUuac---------AUGGCAAGAAugGCGG- -5'
30245 3' -49.1 NC_006273.1 + 70686 0.66 0.99969
Target:  5'- -aCAGGAccacaccguUGUACgCGUgCUgcgACCGCCc -3'
miRNA:   3'- aaGUCCUu--------ACAUG-GCAaGAa--UGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 72986 0.67 0.999399
Target:  5'- --gAGGAGUGcugACCGccgCUcccGCCGCCg -3'
miRNA:   3'- aagUCCUUACa--UGGCaa-GAa--UGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 4457 0.67 0.999399
Target:  5'- aUCGGGAGcgGUACCGUUUUcccaugaCGCUc -3'
miRNA:   3'- aAGUCCUUa-CAUGGCAAGAaug----GCGG- -5'
30245 3' -49.1 NC_006273.1 + 172900 0.67 0.999244
Target:  5'- aUCAGGAGaGcACUgaggcaaGUUCUgcaaUGCCGCCa -3'
miRNA:   3'- aAGUCCUUaCaUGG-------CAAGA----AUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 72648 0.68 0.998638
Target:  5'- ---cGGAcUGcUGCuccgucuCGUUCUUGCCGCCg -3'
miRNA:   3'- aaguCCUuAC-AUG-------GCAAGAAUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 150570 0.68 0.99839
Target:  5'- cUUCAGGGAgccggACCGacCUUgGCUGCCa -3'
miRNA:   3'- -AAGUCCUUaca--UGGCaaGAA-UGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 192999 0.68 0.997701
Target:  5'- cUUUGGGGAUGgcCuCGUgCUcACCGCCg -3'
miRNA:   3'- -AAGUCCUUACauG-GCAaGAaUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 21208 0.68 0.997273
Target:  5'- aUgGGGggUG-GCCGgc--UGCCGCCg -3'
miRNA:   3'- aAgUCCuuACaUGGCaagaAUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 32289 0.69 0.996218
Target:  5'- -gCGGGAccGUcACCG-UCgcgACCGCCg -3'
miRNA:   3'- aaGUCCUuaCA-UGGCaAGaa-UGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 205336 0.69 0.996218
Target:  5'- -gCAGGccaGGUGUugcCCGUggUCUgGCCGCCg -3'
miRNA:   3'- aaGUCC---UUACAu--GGCA--AGAaUGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 103516 0.7 0.993101
Target:  5'- -cCAGGugcGUGCCG-UCgaugcgGCCGCCg -3'
miRNA:   3'- aaGUCCuuaCAUGGCaAGaa----UGGCGG- -5'
30245 3' -49.1 NC_006273.1 + 65807 0.72 0.970837
Target:  5'- cUCAGGGAUGaugAUCGUUCUc-CCGCa -3'
miRNA:   3'- aAGUCCUUACa--UGGCAAGAauGGCGg -5'
30245 3' -49.1 NC_006273.1 + 216349 0.74 0.935108
Target:  5'- gUgGGGAAUGUACCGUUUUcguucACUGUCa -3'
miRNA:   3'- aAgUCCUUACAUGGCAAGAa----UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.