miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 114451 0.65 0.987473
Target:  5'- uUUGUCGACGAcgugggccuauauuCGACGGCGuuGUUUUUc -3'
miRNA:   3'- -AGCAGUUGUU--------------GCUGCCGCgcCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 185051 0.66 0.986399
Target:  5'- cUCGgcgacCAACAccgGCGcCGGCGacguGGUCUCa -3'
miRNA:   3'- -AGCa----GUUGU---UGCuGCCGCg---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 231958 0.66 0.986399
Target:  5'- aCG-CAACAACGACGGgGgGGg---- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCgCgCCagaga -5'
30245 5' -54.4 NC_006273.1 + 140115 0.66 0.986399
Target:  5'- aCGUCGggaauaaaaccGCGggggaaaagaACGGCGGUG-GGUCUCg -3'
miRNA:   3'- aGCAGU-----------UGU----------UGCUGCCGCgCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 142057 0.66 0.986399
Target:  5'- gUCGUCucgcGGCAGCGccgccaGCGGCGaCGGUUa-- -3'
miRNA:   3'- -AGCAG----UUGUUGC------UGCCGC-GCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 178529 0.66 0.986399
Target:  5'- aUCGcgUGGCGGCGGCGGUgguaGCGGcagccUCUCUu -3'
miRNA:   3'- -AGCa-GUUGUUGCUGCCG----CGCC-----AGAGA- -5'
30245 5' -54.4 NC_006273.1 + 46128 0.66 0.984744
Target:  5'- cCGUCuccAACGACGACGGCaaCGGUggCg -3'
miRNA:   3'- aGCAG---UUGUUGCUGCCGc-GCCAgaGa -5'
30245 5' -54.4 NC_006273.1 + 213725 0.66 0.984744
Target:  5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3'
miRNA:   3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 144123 0.66 0.984744
Target:  5'- uUUGUU----ACGACGGCGgGGUgCUCa -3'
miRNA:   3'- -AGCAGuuguUGCUGCCGCgCCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 197740 0.66 0.984744
Target:  5'- cCGUCAACAGCGugccuuuuGCcGCGCgGGUCg-- -3'
miRNA:   3'- aGCAGUUGUUGC--------UGcCGCG-CCAGaga -5'
30245 5' -54.4 NC_006273.1 + 115478 0.66 0.98368
Target:  5'- gCGUCGGCAuAUGAagGGCGCGGgcggccaguacggcCUCUg -3'
miRNA:   3'- aGCAGUUGU-UGCUg-CCGCGCCa-------------GAGA- -5'
30245 5' -54.4 NC_006273.1 + 133425 0.66 0.98294
Target:  5'- cCGUCaAGCGacGCGACGGCGCGcG-Ca-- -3'
miRNA:   3'- aGCAG-UUGU--UGCUGCCGCGC-CaGaga -5'
30245 5' -54.4 NC_006273.1 + 166506 0.66 0.98294
Target:  5'- uUUGUCGugG-CGGCGGCaGCGGUg--- -3'
miRNA:   3'- -AGCAGUugUuGCUGCCG-CGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 156907 0.66 0.981783
Target:  5'- ---cCGACAACGGugauucuguaaccacCGGCGUGGUUUCc -3'
miRNA:   3'- agcaGUUGUUGCU---------------GCCGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 131620 0.66 0.981783
Target:  5'- aCGUCAACGugGgcugguucaaaGCGGCuacggccauugugccGCGcGUCUCg -3'
miRNA:   3'- aGCAGUUGUugC-----------UGCCG---------------CGC-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 6963 0.66 0.980979
Target:  5'- gCGUUGACAcUGgaGCGcCGCGGUCUCg -3'
miRNA:   3'- aGCAGUUGUuGC--UGCcGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 38257 0.66 0.980979
Target:  5'- cCGgCAACGACGGCGGUgGCGG-Cg-- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCG-CGCCaGaga -5'
30245 5' -54.4 NC_006273.1 + 212141 0.66 0.98036
Target:  5'- cUCGUCGGCGcuuACGGagggguguuUGGCgagcccggauccggGCGGUCUCg -3'
miRNA:   3'- -AGCAGUUGU---UGCU---------GCCG--------------CGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 167651 0.66 0.978855
Target:  5'- cUGUgAGCGGCGgcgcaACGGCGgGGUCg-- -3'
miRNA:   3'- aGCAgUUGUUGC-----UGCCGCgCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 45494 0.66 0.978855
Target:  5'- cCGUC-GCAGcCGACGGCgaugcccgGCGGUC-Cg -3'
miRNA:   3'- aGCAGuUGUU-GCUGCCG--------CGCCAGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.