miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 213725 0.66 0.984744
Target:  5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3'
miRNA:   3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 32596 0.66 0.978633
Target:  5'- gCGUCAcACggUGACGcagcagcGCGCGG-CUCa -3'
miRNA:   3'- aGCAGU-UGuuGCUGC-------CGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 167651 0.66 0.978855
Target:  5'- cUGUgAGCGGCGgcgcaACGGCGgGGUCg-- -3'
miRNA:   3'- aGCAgUUGUUGC-----UGCCGCgCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 21704 0.67 0.968582
Target:  5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3'
miRNA:   3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5'
30245 5' -54.4 NC_006273.1 + 222977 0.67 0.974087
Target:  5'- -gGUUAGCAGCGGCGuGCGCaucugCUCg -3'
miRNA:   3'- agCAGUUGUUGCUGC-CGCGcca--GAGa -5'
30245 5' -54.4 NC_006273.1 + 64981 0.67 0.971429
Target:  5'- cCGUCAACucguUGGCGcGCGCcguGGUCUUc -3'
miRNA:   3'- aGCAGUUGuu--GCUGC-CGCG---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 936 0.67 0.974087
Target:  5'- uUCGg-GGCGGCGACGGCGuuGUUUUc -3'
miRNA:   3'- -AGCagUUGUUGCUGCCGCgcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 98694 0.67 0.968582
Target:  5'- gCGgCGGCGGCGAcCGGC-CGGUCgUCg -3'
miRNA:   3'- aGCaGUUGUUGCU-GCCGcGCCAG-AGa -5'
30245 5' -54.4 NC_006273.1 + 156444 0.67 0.968582
Target:  5'- -aGUCGACGGCGuCGcuccGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUGUUGCuGC----CGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 77108 0.67 0.968582
Target:  5'- gCGUCAACggUGaACGGCGCuacGUCg-- -3'
miRNA:   3'- aGCAGUUGuuGC-UGCCGCGc--CAGaga -5'
30245 5' -54.4 NC_006273.1 + 214846 0.67 0.973829
Target:  5'- gCGUUAgccuccugcgccuGCAugG-UGGCGaCGGUCUCg -3'
miRNA:   3'- aGCAGU-------------UGUugCuGCCGC-GCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 173627 0.67 0.97632
Target:  5'- cUCGgCAACGcacccacgaaggcGCGACGGCgcucGCGGUCa-- -3'
miRNA:   3'- -AGCaGUUGU-------------UGCUGCCG----CGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 165285 0.67 0.97656
Target:  5'- cCGUCAucCAGCG-CGGCGCuGUgUCc -3'
miRNA:   3'- aGCAGUu-GUUGCuGCCGCGcCAgAGa -5'
30245 5' -54.4 NC_006273.1 + 79429 0.67 0.97656
Target:  5'- cUUGUCgAGCAGCauACGGCGCacggGGUCUUg -3'
miRNA:   3'- -AGCAG-UUGUUGc-UGCCGCG----CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 167323 0.67 0.97656
Target:  5'- gCGgCGGCAGCGGCGGCcacgGCGGcgCUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCG----CGCCa-GAga -5'
30245 5' -54.4 NC_006273.1 + 157289 0.67 0.968582
Target:  5'- cUGUUgagaAACAGCGGCGGCGgUGGUgaCUg -3'
miRNA:   3'- aGCAG----UUGUUGCUGCCGC-GCCAgaGA- -5'
30245 5' -54.4 NC_006273.1 + 147420 0.67 0.971429
Target:  5'- gCGUCGgcGCGGCGucCGGCgucgggggugGCGGUCUUc -3'
miRNA:   3'- aGCAGU--UGUUGCu-GCCG----------CGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 114446 0.67 0.974087
Target:  5'- gCGUCAcCGGCGGCGGCGCcauGG-Cg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCG---CCaGaga -5'
30245 5' -54.4 NC_006273.1 + 40874 0.67 0.974087
Target:  5'- uUCGg-GGCGGCGACGGCGuuGUUUUc -3'
miRNA:   3'- -AGCagUUGUUGCUGCCGCgcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 189956 0.67 0.974087
Target:  5'- cUCGUCGGC--CGGCGuGgGCGG-CUCg -3'
miRNA:   3'- -AGCAGUUGuuGCUGC-CgCGCCaGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.