miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 1004 0.68 0.955178
Target:  5'- aCGUCAACAGCGGgcacUGGUGCGaGUgCUg- -3'
miRNA:   3'- aGCAGUUGUUGCU----GCCGCGC-CA-GAga -5'
30245 5' -54.4 NC_006273.1 + 68784 0.68 0.962293
Target:  5'- gCGgCGGCGGCGAUGGCGgGG-CUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCgCCaGAga -5'
30245 5' -54.4 NC_006273.1 + 100419 0.68 0.963615
Target:  5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3'
miRNA:   3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5'
30245 5' -54.4 NC_006273.1 + 123092 0.68 0.9513
Target:  5'- -gGUCGGCuGGCGccuCGGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUG-UUGCu--GCCGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 102201 0.68 0.958841
Target:  5'- gCGUCGAUAACGcgucacguuaaGCGaGCGC-GUCUCg -3'
miRNA:   3'- aGCAGUUGUUGC-----------UGC-CGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 192870 0.68 0.962293
Target:  5'- cUGUCAACAGCaGACGuuguGgGCGGUCg-- -3'
miRNA:   3'- aGCAGUUGUUG-CUGC----CgCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 116083 0.67 0.971429
Target:  5'- gCGUCuuGCGACuaagcACGGCGUGGUC-Cg -3'
miRNA:   3'- aGCAGu-UGUUGc----UGCCGCGCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 76264 0.67 0.965223
Target:  5'- cCGUCA-CAACGGCGGUggcaccaGCGGggggUUCa -3'
miRNA:   3'- aGCAGUuGUUGCUGCCG-------CGCCa---GAGa -5'
30245 5' -54.4 NC_006273.1 + 165285 0.67 0.97656
Target:  5'- cCGUCAucCAGCG-CGGCGCuGUgUCc -3'
miRNA:   3'- aGCAGUu-GUUGCuGCCGCGcCAgAGa -5'
30245 5' -54.4 NC_006273.1 + 79429 0.67 0.97656
Target:  5'- cUUGUCgAGCAGCauACGGCGCacggGGUCUUg -3'
miRNA:   3'- -AGCAG-UUGUUGc-UGCCGCG----CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 167323 0.67 0.97656
Target:  5'- gCGgCGGCAGCGGCGGCcacgGCGGcgCUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCG----CGCCa-GAga -5'
30245 5' -54.4 NC_006273.1 + 153850 0.67 0.97656
Target:  5'- aUCGUCAu---CGACGaGUGCGGcCUUa -3'
miRNA:   3'- -AGCAGUuguuGCUGC-CGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 214846 0.67 0.973829
Target:  5'- gCGUUAgccuccugcgccuGCAugG-UGGCGaCGGUCUCg -3'
miRNA:   3'- aGCAGU-------------UGUugCuGCCGC-GCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 161885 0.67 0.97632
Target:  5'- gCGUgGACGGCGAUGGCaaGGUgcugcacCUCa -3'
miRNA:   3'- aGCAgUUGUUGCUGCCGcgCCA-------GAGa -5'
30245 5' -54.4 NC_006273.1 + 98694 0.67 0.968582
Target:  5'- gCGgCGGCGGCGAcCGGC-CGGUCgUCg -3'
miRNA:   3'- aGCaGUUGUUGCU-GCCGcGCCAG-AGa -5'
30245 5' -54.4 NC_006273.1 + 936 0.67 0.974087
Target:  5'- uUCGg-GGCGGCGACGGCGuuGUUUUc -3'
miRNA:   3'- -AGCagUUGUUGCUGCCGCgcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 62042 0.67 0.971429
Target:  5'- gCGgCGGCAccGCGGCGGCGgCGGaCUUg -3'
miRNA:   3'- aGCaGUUGU--UGCUGCCGC-GCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 222977 0.67 0.974087
Target:  5'- -gGUUAGCAGCGGCGuGCGCaucugCUCg -3'
miRNA:   3'- agCAGUUGUUGCUGC-CGCGcca--GAGa -5'
30245 5' -54.4 NC_006273.1 + 64981 0.67 0.971429
Target:  5'- cCGUCAACucguUGGCGcGCGCcguGGUCUUc -3'
miRNA:   3'- aGCAGUUGuu--GCUGC-CGCG---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 148778 0.67 0.971429
Target:  5'- cCGagGcCGGCGGCGGCGCcgugcGUCUCa -3'
miRNA:   3'- aGCagUuGUUGCUGCCGCGc----CAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.