Results 81 - 100 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 79429 | 0.67 | 0.97656 |
Target: 5'- cUUGUCgAGCAGCauACGGCGCacggGGUCUUg -3' miRNA: 3'- -AGCAG-UUGUUGc-UGCCGCG----CCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 167323 | 0.67 | 0.97656 |
Target: 5'- gCGgCGGCAGCGGCGGCcacgGCGGcgCUg- -3' miRNA: 3'- aGCaGUUGUUGCUGCCG----CGCCa-GAga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 161885 | 0.67 | 0.97632 |
Target: 5'- gCGUgGACGGCGAUGGCaaGGUgcugcacCUCa -3' miRNA: 3'- aGCAgUUGUUGCUGCCGcgCCA-------GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 936 | 0.67 | 0.974087 |
Target: 5'- uUCGg-GGCGGCGACGGCGuuGUUUUc -3' miRNA: 3'- -AGCagUUGUUGCUGCCGCgcCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 222977 | 0.67 | 0.974087 |
Target: 5'- -gGUUAGCAGCGGCGuGCGCaucugCUCg -3' miRNA: 3'- agCAGUUGUUGCUGC-CGCGcca--GAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 214846 | 0.67 | 0.973829 |
Target: 5'- gCGUUAgccuccugcgccuGCAugG-UGGCGaCGGUCUCg -3' miRNA: 3'- aGCAGU-------------UGUugCuGCCGC-GCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 148778 | 0.67 | 0.971429 |
Target: 5'- cCGagGcCGGCGGCGGCGCcgugcGUCUCa -3' miRNA: 3'- aGCagUuGUUGCUGCCGCGc----CAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 98694 | 0.67 | 0.968582 |
Target: 5'- gCGgCGGCGGCGAcCGGC-CGGUCgUCg -3' miRNA: 3'- aGCaGUUGUUGCU-GCCGcGCCAG-AGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 22141 | 0.67 | 0.965538 |
Target: 5'- cUG-CggUAGCGGCGGCGgCcGUCUCUg -3' miRNA: 3'- aGCaGuuGUUGCUGCCGC-GcCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 188394 | 0.67 | 0.965538 |
Target: 5'- gCGUCGGgGACG-CGGUGgguCGGUUUCUc -3' miRNA: 3'- aGCAGUUgUUGCuGCCGC---GCCAGAGA- -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 68765 | 0.67 | 0.968582 |
Target: 5'- -gGUCGACAugGuccagGCGGUggaaGCGGUCUg- -3' miRNA: 3'- agCAGUUGUugC-----UGCCG----CGCCAGAga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 156444 | 0.67 | 0.968582 |
Target: 5'- -aGUCGACGGCGuCGcuccGUGCGGUCg-- -3' miRNA: 3'- agCAGUUGUUGCuGC----CGCGCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 147420 | 0.67 | 0.971429 |
Target: 5'- gCGUCGgcGCGGCGucCGGCgucgggggugGCGGUCUUc -3' miRNA: 3'- aGCAGU--UGUUGCu-GCCG----------CGCCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 116083 | 0.67 | 0.971429 |
Target: 5'- gCGUCuuGCGACuaagcACGGCGUGGUC-Cg -3' miRNA: 3'- aGCAGu-UGUUGc----UGCCGCGCCAGaGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 77108 | 0.67 | 0.968582 |
Target: 5'- gCGUCAACggUGaACGGCGCuacGUCg-- -3' miRNA: 3'- aGCAGUUGuuGC-UGCCGCGc--CAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 46128 | 0.66 | 0.984744 |
Target: 5'- cCGUCuccAACGACGACGGCaaCGGUggCg -3' miRNA: 3'- aGCAG---UUGUUGCUGCCGc-GCCAgaGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 231958 | 0.66 | 0.986399 |
Target: 5'- aCG-CAACAACGACGGgGgGGg---- -3' miRNA: 3'- aGCaGUUGUUGCUGCCgCgCCagaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 185051 | 0.66 | 0.986399 |
Target: 5'- cUCGgcgacCAACAccgGCGcCGGCGacguGGUCUCa -3' miRNA: 3'- -AGCa----GUUGU---UGCuGCCGCg---CCAGAGa -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 142057 | 0.66 | 0.986399 |
Target: 5'- gUCGUCucgcGGCAGCGccgccaGCGGCGaCGGUUa-- -3' miRNA: 3'- -AGCAG----UUGUUGC------UGCCGC-GCCAGaga -5' |
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30245 | 5' | -54.4 | NC_006273.1 | + | 140115 | 0.66 | 0.986399 |
Target: 5'- aCGUCGggaauaaaaccGCGggggaaaagaACGGCGGUG-GGUCUCg -3' miRNA: 3'- aGCAGU-----------UGU----------UGCUGCCGCgCCAGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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