miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 227702 1.09 0.00717
Target:  5'- aUCGUCAACAACGACGGCGCGGUCUCUg -3'
miRNA:   3'- -AGCAGUUGUUGCUGCCGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 36500 0.78 0.522384
Target:  5'- gUGUUGcCGACGGCGGCGCGGUCcgUCg -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCGCCAG--AGa -5'
30245 5' -54.4 NC_006273.1 + 188051 0.76 0.590664
Target:  5'- aUGaCAGCGcCGGCGGCGCGgGUCUCg -3'
miRNA:   3'- aGCaGUUGUuGCUGCCGCGC-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 145121 0.74 0.699781
Target:  5'- aCGUCuACAACGACGcGCGCaaGGUgCUCa -3'
miRNA:   3'- aGCAGuUGUUGCUGC-CGCG--CCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 169973 0.74 0.709537
Target:  5'- gCGUCGAC-ACGGCaGGUGCGGaugUCUCg -3'
miRNA:   3'- aGCAGUUGuUGCUG-CCGCGCC---AGAGa -5'
30245 5' -54.4 NC_006273.1 + 179428 0.74 0.719231
Target:  5'- gCGUCAGCGGC-ACGGUGCuGcGUCUCa -3'
miRNA:   3'- aGCAGUUGUUGcUGCCGCG-C-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 21546 0.74 0.732682
Target:  5'- gCGuuUCGAgGACGGCGGCGCGGcgcagcggcugagccUCUCg -3'
miRNA:   3'- aGC--AGUUgUUGCUGCCGCGCC---------------AGAGa -5'
30245 5' -54.4 NC_006273.1 + 87515 0.74 0.737448
Target:  5'- aUGUCGGaguuugcCAGCG-CGGCgGCGGUCUCUg -3'
miRNA:   3'- aGCAGUU-------GUUGCuGCCG-CGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 63174 0.74 0.738399
Target:  5'- cCGUCucGCGGCGcggcCGGCGCGGcCUCg -3'
miRNA:   3'- aGCAGu-UGUUGCu---GCCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 33244 0.74 0.738399
Target:  5'- cCGgggCGGCGACGACGGCG-GGUC-Cg -3'
miRNA:   3'- aGCa--GUUGUUGCUGCCGCgCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 84707 0.73 0.765549
Target:  5'- uUCGUCGcgggccaaauccaGCAGCGAUgaGGCGCgucguGGUCUCUu -3'
miRNA:   3'- -AGCAGU-------------UGUUGCUG--CCGCG-----CCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 38636 0.73 0.76647
Target:  5'- cCGUCAGCAGCGACgcggGGUGCGG-Cg-- -3'
miRNA:   3'- aGCAGUUGUUGCUG----CCGCGCCaGaga -5'
30245 5' -54.4 NC_006273.1 + 94945 0.73 0.775612
Target:  5'- -gGUCGACcGCGACGGCuuccgGGUCUCg -3'
miRNA:   3'- agCAGUUGuUGCUGCCGcg---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 94376 0.73 0.775612
Target:  5'- aCGUCGguaACAGCcGCGGCGCaGUCUUg -3'
miRNA:   3'- aGCAGU---UGUUGcUGCCGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 139849 0.72 0.819334
Target:  5'- -aGUCGACAcgccggguGgGACGGuCGUGGUCUCc -3'
miRNA:   3'- agCAGUUGU--------UgCUGCC-GCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 113741 0.72 0.827626
Target:  5'- gUGgCGACGGCGGCGGCGCcGUgCUCa -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCGcCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 197185 0.72 0.835748
Target:  5'- cCGUCuccggaugAGCGGCcGCGGCGCGGgCUCg -3'
miRNA:   3'- aGCAG--------UUGUUGcUGCCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 117455 0.71 0.842909
Target:  5'- uUCGUCcgaggacGACGACGACGccgcCGCGGUUUCc -3'
miRNA:   3'- -AGCAG-------UUGUUGCUGCc---GCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 34187 0.71 0.843696
Target:  5'- gCGUgGAaaaaAACGGCGGCGCGGUg--- -3'
miRNA:   3'- aGCAgUUg---UUGCUGCCGCGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 197075 0.71 0.849151
Target:  5'- gCGgCAGCAGCGGCGGCGCcgacggugauggugGGUC-Cg -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCG--------------CCAGaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.