miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 2182 0.71 0.849151
Target:  5'- gCGgCAGCAGCGGCGGCGCcgacggugauggugGGUC-Cg -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCG--------------CCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 167246 0.71 0.851461
Target:  5'- -gGUCGAuCAugGGCGGCGUGGUg--- -3'
miRNA:   3'- agCAGUU-GUugCUGCCGCGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 118015 0.71 0.854515
Target:  5'- aCGUCAAUAGCGACGGUggaaguggcgggcacGCGGgUUCc -3'
miRNA:   3'- aGCAGUUGUUGCUGCCG---------------CGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 63510 0.71 0.866421
Target:  5'- uUCGUCAagcACAuCGACGcCGCGGUUUUUa -3'
miRNA:   3'- -AGCAGU---UGUuGCUGCcGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 117661 0.71 0.873603
Target:  5'- aCGgauGCAAaGACGGCGCGGgCUCg -3'
miRNA:   3'- aGCaguUGUUgCUGCCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 142288 0.7 0.880581
Target:  5'- aCGUCGuguggGCGGCGugGaCGCGGUgCUCg -3'
miRNA:   3'- aGCAGU-----UGUUGCugCcGCGCCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 76838 0.7 0.88735
Target:  5'- -aGUCGACuucGCGACGuGUGUGG-CUCUg -3'
miRNA:   3'- agCAGUUGu--UGCUGC-CGCGCCaGAGA- -5'
30245 5' -54.4 NC_006273.1 + 156085 0.7 0.899619
Target:  5'- aUCGgucgCGACAugcuagaGCGcACGGCGCGGUUcaUCa -3'
miRNA:   3'- -AGCa---GUUGU-------UGC-UGCCGCGCCAG--AGa -5'
30245 5' -54.4 NC_006273.1 + 132799 0.7 0.900243
Target:  5'- gCGUCAACGACGGCGGCagcacCGGcCcCa -3'
miRNA:   3'- aGCAGUUGUUGCUGCCGc----GCCaGaGa -5'
30245 5' -54.4 NC_006273.1 + 196974 0.7 0.91051
Target:  5'- cUCGUCGcuguugccgccaccGCAGCGGCGGCGaCGGa---- -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUGCCGC-GCCagaga -5'
30245 5' -54.4 NC_006273.1 + 199374 0.7 0.912255
Target:  5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3'
miRNA:   3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5'
30245 5' -54.4 NC_006273.1 + 111700 0.7 0.912255
Target:  5'- aUCGUgAAC-GCGGCauucuauGCGUGGUCUCUa -3'
miRNA:   3'- -AGCAgUUGuUGCUGc------CGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 52576 0.7 0.912255
Target:  5'- aCGUguuccCAGCAGgGAcCGuGUGCGGUCUCUu -3'
miRNA:   3'- aGCA-----GUUGUUgCU-GC-CGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 134469 0.7 0.912255
Target:  5'- gCGUCuGCAGCG-CGGCGCcGcCUCg -3'
miRNA:   3'- aGCAGuUGUUGCuGCCGCGcCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 197062 0.7 0.912255
Target:  5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3'
miRNA:   3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 153593 0.69 0.917926
Target:  5'- gCGgCGGCGugacCGGCGGUGCGGUCg-- -3'
miRNA:   3'- aGCaGUUGUu---GCUGCCGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 163073 0.69 0.917926
Target:  5'- cCGaggCGGCGGCGACGGCGgCGG-CUg- -3'
miRNA:   3'- aGCa--GUUGUUGCUGCCGC-GCCaGAga -5'
30245 5' -54.4 NC_006273.1 + 105841 0.69 0.920131
Target:  5'- gCGUCA-CAGCcgaGGCGGCGCGGcgcagcgccggccauUCUCc -3'
miRNA:   3'- aGCAGUuGUUG---CUGCCGCGCC---------------AGAGa -5'
30245 5' -54.4 NC_006273.1 + 7754 0.69 0.923371
Target:  5'- gCGUCcgaaGGCGAgGAUGGCaUGGUCUCg -3'
miRNA:   3'- aGCAG----UUGUUgCUGCCGcGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 149441 0.69 0.933581
Target:  5'- ---aCGGCAACGGCGGCGcCGGUg--- -3'
miRNA:   3'- agcaGUUGUUGCUGCCGC-GCCAgaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.