Results 101 - 118 of 118 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 212141 | 0.66 | 0.98036 |
Target: 5'- cUCGUCGGCGcuuACGGagggguguuUGGCgagcccggauccggGCGGUCUCg -3' miRNA: 3'- -AGCAGUUGU---UGCU---------GCCG--------------CGCCAGAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 6963 | 0.66 | 0.980979 |
Target: 5'- gCGUUGACAcUGgaGCGcCGCGGUCUCg -3' miRNA: 3'- aGCAGUUGUuGC--UGCcGCGCCAGAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 38257 | 0.66 | 0.980979 |
Target: 5'- cCGgCAACGACGGCGGUgGCGG-Cg-- -3' miRNA: 3'- aGCaGUUGUUGCUGCCG-CGCCaGaga -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 131620 | 0.66 | 0.981783 |
Target: 5'- aCGUCAACGugGgcugguucaaaGCGGCuacggccauugugccGCGcGUCUCg -3' miRNA: 3'- aGCAGUUGUugC-----------UGCCG---------------CGC-CAGAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 156907 | 0.66 | 0.981783 |
Target: 5'- ---cCGACAACGGugauucuguaaccacCGGCGUGGUUUCc -3' miRNA: 3'- agcaGUUGUUGCU---------------GCCGCGCCAGAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 166506 | 0.66 | 0.98294 |
Target: 5'- uUUGUCGugG-CGGCGGCaGCGGUg--- -3' miRNA: 3'- -AGCAGUugUuGCUGCCG-CGCCAgaga -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 133425 | 0.66 | 0.98294 |
Target: 5'- cCGUCaAGCGacGCGACGGCGCGcG-Ca-- -3' miRNA: 3'- aGCAG-UUGU--UGCUGCCGCGC-CaGaga -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 115478 | 0.66 | 0.98368 |
Target: 5'- gCGUCGGCAuAUGAagGGCGCGGgcggccaguacggcCUCUg -3' miRNA: 3'- aGCAGUUGU-UGCUg-CCGCGCCa-------------GAGA- -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 197740 | 0.66 | 0.984744 |
Target: 5'- cCGUCAACAGCGugccuuuuGCcGCGCgGGUCg-- -3' miRNA: 3'- aGCAGUUGUUGC--------UGcCGCG-CCAGaga -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 144123 | 0.66 | 0.984744 |
Target: 5'- uUUGUU----ACGACGGCGgGGUgCUCa -3' miRNA: 3'- -AGCAGuuguUGCUGCCGCgCCA-GAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 213725 | 0.66 | 0.984744 |
Target: 5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3' miRNA: 3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 46128 | 0.66 | 0.984744 |
Target: 5'- cCGUCuccAACGACGACGGCaaCGGUggCg -3' miRNA: 3'- aGCAG---UUGUUGCUGCCGc-GCCAgaGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 140115 | 0.66 | 0.986399 |
Target: 5'- aCGUCGggaauaaaaccGCGggggaaaagaACGGCGGUG-GGUCUCg -3' miRNA: 3'- aGCAGU-----------UGU----------UGCUGCCGCgCCAGAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 142057 | 0.66 | 0.986399 |
Target: 5'- gUCGUCucgcGGCAGCGccgccaGCGGCGaCGGUUa-- -3' miRNA: 3'- -AGCAG----UUGUUGC------UGCCGC-GCCAGaga -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 185051 | 0.66 | 0.986399 |
Target: 5'- cUCGgcgacCAACAccgGCGcCGGCGacguGGUCUCa -3' miRNA: 3'- -AGCa----GUUGU---UGCuGCCGCg---CCAGAGa -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 231958 | 0.66 | 0.986399 |
Target: 5'- aCG-CAACAACGACGGgGgGGg---- -3' miRNA: 3'- aGCaGUUGUUGCUGCCgCgCCagaga -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 178529 | 0.66 | 0.986399 |
Target: 5'- aUCGcgUGGCGGCGGCGGUgguaGCGGcagccUCUCUu -3' miRNA: 3'- -AGCa-GUUGUUGCUGCCG----CGCC-----AGAGA- -5' |
|||||||
30245 | 5' | -54.4 | NC_006273.1 | + | 114451 | 0.65 | 0.987473 |
Target: 5'- uUUGUCGACGAcgugggccuauauuCGACGGCGuuGUUUUUc -3' miRNA: 3'- -AGCAGUUGUU--------------GCUGCCGCgcCAGAGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home