miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 147420 0.67 0.971429
Target:  5'- gCGUCGgcGCGGCGucCGGCgucgggggugGCGGUCUUc -3'
miRNA:   3'- aGCAGU--UGUUGCu-GCCG----------CGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 98694 0.67 0.968582
Target:  5'- gCGgCGGCGGCGAcCGGC-CGGUCgUCg -3'
miRNA:   3'- aGCaGUUGUUGCU-GCCGcGCCAG-AGa -5'
30245 5' -54.4 NC_006273.1 + 157289 0.67 0.968582
Target:  5'- cUGUUgagaAACAGCGGCGGCGgUGGUgaCUg -3'
miRNA:   3'- aGCAG----UUGUUGCUGCCGC-GCCAgaGA- -5'
30245 5' -54.4 NC_006273.1 + 21704 0.67 0.968582
Target:  5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3'
miRNA:   3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5'
30245 5' -54.4 NC_006273.1 + 156444 0.67 0.968582
Target:  5'- -aGUCGACGGCGuCGcuccGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUGUUGCuGC----CGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 68765 0.67 0.968582
Target:  5'- -gGUCGACAugGuccagGCGGUggaaGCGGUCUg- -3'
miRNA:   3'- agCAGUUGUugC-----UGCCG----CGCCAGAga -5'
30245 5' -54.4 NC_006273.1 + 77108 0.67 0.968582
Target:  5'- gCGUCAACggUGaACGGCGCuacGUCg-- -3'
miRNA:   3'- aGCAGUUGuuGC-UGCCGCGc--CAGaga -5'
30245 5' -54.4 NC_006273.1 + 22141 0.67 0.965538
Target:  5'- cUG-CggUAGCGGCGGCGgCcGUCUCUg -3'
miRNA:   3'- aGCaGuuGUUGCUGCCGC-GcCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 98204 0.67 0.965538
Target:  5'- cUCGcugagCGGCAGCGGCGGCacccCGG-CUCa -3'
miRNA:   3'- -AGCa----GUUGUUGCUGCCGc---GCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 188394 0.67 0.965538
Target:  5'- gCGUCGGgGACG-CGGUGgguCGGUUUCUc -3'
miRNA:   3'- aGCAGUUgUUGCuGCCGC---GCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 76264 0.67 0.965223
Target:  5'- cCGUCA-CAACGGCGGUggcaccaGCGGggggUUCa -3'
miRNA:   3'- aGCAGUuGUUGCUGCCG-------CGCCa---GAGa -5'
30245 5' -54.4 NC_006273.1 + 7564 0.67 0.964586
Target:  5'- uUCGUcCAACAuCGACGGUGCacccguuacucggaGGUgUCa -3'
miRNA:   3'- -AGCA-GUUGUuGCUGCCGCG--------------CCAgAGa -5'
30245 5' -54.4 NC_006273.1 + 100419 0.68 0.963615
Target:  5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3'
miRNA:   3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5'
30245 5' -54.4 NC_006273.1 + 68784 0.68 0.962293
Target:  5'- gCGgCGGCGGCGAUGGCGgGG-CUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCgCCaGAga -5'
30245 5' -54.4 NC_006273.1 + 192870 0.68 0.962293
Target:  5'- cUGUCAACAGCaGACGuuguGgGCGGUCg-- -3'
miRNA:   3'- aGCAGUUGUUG-CUGC----CgCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 209265 0.68 0.958841
Target:  5'- gUCGggaccgCAGCGccCGGCGGCGUauccgcaaGGUCUCg -3'
miRNA:   3'- -AGCa-----GUUGUu-GCUGCCGCG--------CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 102201 0.68 0.958841
Target:  5'- gCGUCGAUAACGcgucacguuaaGCGaGCGC-GUCUCg -3'
miRNA:   3'- aGCAGUUGUUGC-----------UGC-CGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 27384 0.68 0.957764
Target:  5'- uUCGUCAGCAGCGACGccgacaagaccucaGCaUGG-CUCg -3'
miRNA:   3'- -AGCAGUUGUUGCUGC--------------CGcGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 1004 0.68 0.955178
Target:  5'- aCGUCAACAGCGGgcacUGGUGCGaGUgCUg- -3'
miRNA:   3'- aGCAGUUGUUGCU----GCCGCGC-CA-GAga -5'
30245 5' -54.4 NC_006273.1 + 105762 0.68 0.955178
Target:  5'- -gGUCAGgGAUGACGGgGaGGUUUCg -3'
miRNA:   3'- agCAGUUgUUGCUGCCgCgCCAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.