miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 105762 0.68 0.955178
Target:  5'- -gGUCAGgGAUGACGGgGaGGUUUCg -3'
miRNA:   3'- agCAGUUgUUGCUGCCgCgCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 28894 0.68 0.955178
Target:  5'- gCGcCAGCGACGcCGGauaacgaggcaGCGGUCUUUg -3'
miRNA:   3'- aGCaGUUGUUGCuGCCg----------CGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 123092 0.68 0.9513
Target:  5'- -gGUCGGCuGGCGccuCGGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUG-UUGCu--GCCGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 47376 0.68 0.9513
Target:  5'- aCGaUAGCAACGACGaCGCGGUUg-- -3'
miRNA:   3'- aGCaGUUGUUGCUGCcGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 116249 0.68 0.947204
Target:  5'- aCGUCAu--GCG-CGGCGCcGUCUCc -3'
miRNA:   3'- aGCAGUuguUGCuGCCGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 165637 0.68 0.942887
Target:  5'- aCG-CAGCAcgguGCcGCGGCcCGGUCUCUg -3'
miRNA:   3'- aGCaGUUGU----UGcUGCCGcGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 38073 0.68 0.942887
Target:  5'- cUCGggCAGCAGCcGCcGCGCGGcCUCg -3'
miRNA:   3'- -AGCa-GUUGUUGcUGcCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 87699 0.68 0.942887
Target:  5'- gCGgugguGCAGCGGCGGCugaGCGGUCa-- -3'
miRNA:   3'- aGCagu--UGUUGCUGCCG---CGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 232966 0.68 0.942887
Target:  5'- cUCGggCAGCAGCcGCcGCGCGGcCUCg -3'
miRNA:   3'- -AGCa-GUUGUUGcUGcCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 49988 0.69 0.938347
Target:  5'- aCGUCGGCcGCGACGGCGaGGg---- -3'
miRNA:   3'- aGCAGUUGuUGCUGCCGCgCCagaga -5'
30245 5' -54.4 NC_006273.1 + 22995 0.69 0.938347
Target:  5'- gCGgacGCAuCGACGGCGUGaGUCUCc -3'
miRNA:   3'- aGCaguUGUuGCUGCCGCGC-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 162798 0.69 0.938347
Target:  5'- gUGUCAcCAACGGCaGcCGCGGUCg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGcC-GCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 97753 0.69 0.938347
Target:  5'- aUCGUCGAacggcaAGCGACGGCccgauacucGCGGUgUUUc -3'
miRNA:   3'- -AGCAGUUg-----UUGCUGCCG---------CGCCAgAGA- -5'
30245 5' -54.4 NC_006273.1 + 133198 0.69 0.938347
Target:  5'- gCGUUAu---CGACGcCGCGGUCUCa -3'
miRNA:   3'- aGCAGUuguuGCUGCcGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 151251 0.69 0.938347
Target:  5'- cUCGUCugccgugaucaAGCGGCG-CGGCGCGGaccUUUCa -3'
miRNA:   3'- -AGCAG-----------UUGUUGCuGCCGCGCC---AGAGa -5'
30245 5' -54.4 NC_006273.1 + 60279 0.69 0.933581
Target:  5'- gCGUCAACGACagcacaGACGGCGUGccGUCg-- -3'
miRNA:   3'- aGCAGUUGUUG------CUGCCGCGC--CAGaga -5'
30245 5' -54.4 NC_006273.1 + 51499 0.69 0.933581
Target:  5'- cCGgCGGCAACGGCGGCGacgaGGacaacucgcUCUCg -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCg---CC---------AGAGa -5'
30245 5' -54.4 NC_006273.1 + 149441 0.69 0.933581
Target:  5'- ---aCGGCAACGGCGGCGcCGGUg--- -3'
miRNA:   3'- agcaGUUGUUGCUGCCGC-GCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 203092 0.69 0.933581
Target:  5'- gUCG-CGGCGgucGCGACGGUGaCGGUCcCg -3'
miRNA:   3'- -AGCaGUUGU---UGCUGCCGC-GCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 7754 0.69 0.923371
Target:  5'- gCGUCcgaaGGCGAgGAUGGCaUGGUCUCg -3'
miRNA:   3'- aGCAG----UUGUUgCUGCCGcGCCAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.