miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 936 0.67 0.974087
Target:  5'- uUCGg-GGCGGCGACGGCGuuGUUUUc -3'
miRNA:   3'- -AGCagUUGUUGCUGCCGCgcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 1004 0.68 0.955178
Target:  5'- aCGUCAACAGCGGgcacUGGUGCGaGUgCUg- -3'
miRNA:   3'- aGCAGUUGUUGCU----GCCGCGC-CA-GAga -5'
30245 5' -54.4 NC_006273.1 + 2182 0.71 0.849151
Target:  5'- gCGgCAGCAGCGGCGGCGCcgacggugauggugGGUC-Cg -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCG--------------CCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 6963 0.66 0.980979
Target:  5'- gCGUUGACAcUGgaGCGcCGCGGUCUCg -3'
miRNA:   3'- aGCAGUUGUuGC--UGCcGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 7564 0.67 0.964586
Target:  5'- uUCGUcCAACAuCGACGGUGCacccguuacucggaGGUgUCa -3'
miRNA:   3'- -AGCA-GUUGUuGCUGCCGCG--------------CCAgAGa -5'
30245 5' -54.4 NC_006273.1 + 7754 0.69 0.923371
Target:  5'- gCGUCcgaaGGCGAgGAUGGCaUGGUCUCg -3'
miRNA:   3'- aGCAG----UUGUUgCUGCCGcGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 21546 0.74 0.732682
Target:  5'- gCGuuUCGAgGACGGCGGCGCGGcgcagcggcugagccUCUCg -3'
miRNA:   3'- aGC--AGUUgUUGCUGCCGCGCC---------------AGAGa -5'
30245 5' -54.4 NC_006273.1 + 21704 0.67 0.968582
Target:  5'- cCGUCGccGCAGgccuuUGuCGGCGCGG-CUCUu -3'
miRNA:   3'- aGCAGU--UGUU-----GCuGCCGCGCCaGAGA- -5'
30245 5' -54.4 NC_006273.1 + 22141 0.67 0.965538
Target:  5'- cUG-CggUAGCGGCGGCGgCcGUCUCUg -3'
miRNA:   3'- aGCaGuuGUUGCUGCCGC-GcCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 22995 0.69 0.938347
Target:  5'- gCGgacGCAuCGACGGCGUGaGUCUCc -3'
miRNA:   3'- aGCaguUGUuGCUGCCGCGC-CAGAGa -5'
30245 5' -54.4 NC_006273.1 + 27384 0.68 0.957764
Target:  5'- uUCGUCAGCAGCGACGccgacaagaccucaGCaUGG-CUCg -3'
miRNA:   3'- -AGCAGUUGUUGCUGC--------------CGcGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 28894 0.68 0.955178
Target:  5'- gCGcCAGCGACGcCGGauaacgaggcaGCGGUCUUUg -3'
miRNA:   3'- aGCaGUUGUUGCuGCCg----------CGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 32596 0.66 0.978633
Target:  5'- gCGUCAcACggUGACGcagcagcGCGCGG-CUCa -3'
miRNA:   3'- aGCAGU-UGuuGCUGC-------CGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 33244 0.74 0.738399
Target:  5'- cCGgggCGGCGACGACGGCG-GGUC-Cg -3'
miRNA:   3'- aGCa--GUUGUUGCUGCCGCgCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 34187 0.71 0.843696
Target:  5'- gCGUgGAaaaaAACGGCGGCGCGGUg--- -3'
miRNA:   3'- aGCAgUUg---UUGCUGCCGCGCCAgaga -5'
30245 5' -54.4 NC_006273.1 + 36500 0.78 0.522384
Target:  5'- gUGUUGcCGACGGCGGCGCGGUCcgUCg -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCGCCAG--AGa -5'
30245 5' -54.4 NC_006273.1 + 38073 0.68 0.942887
Target:  5'- cUCGggCAGCAGCcGCcGCGCGGcCUCg -3'
miRNA:   3'- -AGCa-GUUGUUGcUGcCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 38257 0.66 0.980979
Target:  5'- cCGgCAACGACGGCGGUgGCGG-Cg-- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCG-CGCCaGaga -5'
30245 5' -54.4 NC_006273.1 + 38636 0.73 0.76647
Target:  5'- cCGUCAGCAGCGACgcggGGUGCGG-Cg-- -3'
miRNA:   3'- aGCAGUUGUUGCUG----CCGCGCCaGaga -5'
30245 5' -54.4 NC_006273.1 + 40874 0.67 0.974087
Target:  5'- uUCGg-GGCGGCGACGGCGuuGUUUUc -3'
miRNA:   3'- -AGCagUUGUUGCUGCCGCgcCAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.