miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 45494 0.66 0.978855
Target:  5'- cCGUC-GCAGcCGACGGCgaugcccgGCGGUC-Cg -3'
miRNA:   3'- aGCAGuUGUU-GCUGCCG--------CGCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 46128 0.66 0.984744
Target:  5'- cCGUCuccAACGACGACGGCaaCGGUggCg -3'
miRNA:   3'- aGCAG---UUGUUGCUGCCGc-GCCAgaGa -5'
30245 5' -54.4 NC_006273.1 + 47376 0.68 0.9513
Target:  5'- aCGaUAGCAACGACGaCGCGGUUg-- -3'
miRNA:   3'- aGCaGUUGUUGCUGCcGCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 49988 0.69 0.938347
Target:  5'- aCGUCGGCcGCGACGGCGaGGg---- -3'
miRNA:   3'- aGCAGUUGuUGCUGCCGCgCCagaga -5'
30245 5' -54.4 NC_006273.1 + 51499 0.69 0.933581
Target:  5'- cCGgCGGCAACGGCGGCGacgaGGacaacucgcUCUCg -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCg---CC---------AGAGa -5'
30245 5' -54.4 NC_006273.1 + 52576 0.7 0.912255
Target:  5'- aCGUguuccCAGCAGgGAcCGuGUGCGGUCUCUu -3'
miRNA:   3'- aGCA-----GUUGUUgCU-GC-CGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 60279 0.69 0.933581
Target:  5'- gCGUCAACGACagcacaGACGGCGUGccGUCg-- -3'
miRNA:   3'- aGCAGUUGUUG------CUGCCGCGC--CAGaga -5'
30245 5' -54.4 NC_006273.1 + 62042 0.67 0.971429
Target:  5'- gCGgCGGCAccGCGGCGGCGgCGGaCUUg -3'
miRNA:   3'- aGCaGUUGU--UGCUGCCGC-GCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 63174 0.74 0.738399
Target:  5'- cCGUCucGCGGCGcggcCGGCGCGGcCUCg -3'
miRNA:   3'- aGCAGu-UGUUGCu---GCCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 63510 0.71 0.866421
Target:  5'- uUCGUCAagcACAuCGACGcCGCGGUUUUUa -3'
miRNA:   3'- -AGCAGU---UGUuGCUGCcGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 64981 0.67 0.971429
Target:  5'- cCGUCAACucguUGGCGcGCGCcguGGUCUUc -3'
miRNA:   3'- aGCAGUUGuu--GCUGC-CGCG---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 68765 0.67 0.968582
Target:  5'- -gGUCGACAugGuccagGCGGUggaaGCGGUCUg- -3'
miRNA:   3'- agCAGUUGUugC-----UGCCG----CGCCAGAga -5'
30245 5' -54.4 NC_006273.1 + 68784 0.68 0.962293
Target:  5'- gCGgCGGCGGCGAUGGCGgGG-CUg- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCgCCaGAga -5'
30245 5' -54.4 NC_006273.1 + 76264 0.67 0.965223
Target:  5'- cCGUCA-CAACGGCGGUggcaccaGCGGggggUUCa -3'
miRNA:   3'- aGCAGUuGUUGCUGCCG-------CGCCa---GAGa -5'
30245 5' -54.4 NC_006273.1 + 76838 0.7 0.88735
Target:  5'- -aGUCGACuucGCGACGuGUGUGG-CUCUg -3'
miRNA:   3'- agCAGUUGu--UGCUGC-CGCGCCaGAGA- -5'
30245 5' -54.4 NC_006273.1 + 77108 0.67 0.968582
Target:  5'- gCGUCAACggUGaACGGCGCuacGUCg-- -3'
miRNA:   3'- aGCAGUUGuuGC-UGCCGCGc--CAGaga -5'
30245 5' -54.4 NC_006273.1 + 79429 0.67 0.97656
Target:  5'- cUUGUCgAGCAGCauACGGCGCacggGGUCUUg -3'
miRNA:   3'- -AGCAG-UUGUUGc-UGCCGCG----CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 84707 0.73 0.765549
Target:  5'- uUCGUCGcgggccaaauccaGCAGCGAUgaGGCGCgucguGGUCUCUu -3'
miRNA:   3'- -AGCAGU-------------UGUUGCUG--CCGCG-----CCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 87515 0.74 0.737448
Target:  5'- aUGUCGGaguuugcCAGCG-CGGCgGCGGUCUCUg -3'
miRNA:   3'- aGCAGUU-------GUUGCuGCCG-CGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 87699 0.68 0.942887
Target:  5'- gCGgugguGCAGCGGCGGCugaGCGGUCa-- -3'
miRNA:   3'- aGCagu--UGUUGCUGCCG---CGCCAGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.