miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 94376 0.73 0.775612
Target:  5'- aCGUCGguaACAGCcGCGGCGCaGUCUUg -3'
miRNA:   3'- aGCAGU---UGUUGcUGCCGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 94945 0.73 0.775612
Target:  5'- -gGUCGACcGCGACGGCuuccgGGUCUCg -3'
miRNA:   3'- agCAGUUGuUGCUGCCGcg---CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 97753 0.69 0.938347
Target:  5'- aUCGUCGAacggcaAGCGACGGCccgauacucGCGGUgUUUc -3'
miRNA:   3'- -AGCAGUUg-----UUGCUGCCG---------CGCCAgAGA- -5'
30245 5' -54.4 NC_006273.1 + 98204 0.67 0.965538
Target:  5'- cUCGcugagCGGCAGCGGCGGCacccCGG-CUCa -3'
miRNA:   3'- -AGCa----GUUGUUGCUGCCGc---GCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 98694 0.67 0.968582
Target:  5'- gCGgCGGCGGCGAcCGGC-CGGUCgUCg -3'
miRNA:   3'- aGCaGUUGUUGCU-GCCGcGCCAG-AGa -5'
30245 5' -54.4 NC_006273.1 + 100419 0.68 0.963615
Target:  5'- gUCG-CGACGACGACacuuucguuuuuaugGGCGCGcGUCa-- -3'
miRNA:   3'- -AGCaGUUGUUGCUG---------------CCGCGC-CAGaga -5'
30245 5' -54.4 NC_006273.1 + 102201 0.68 0.958841
Target:  5'- gCGUCGAUAACGcgucacguuaaGCGaGCGC-GUCUCg -3'
miRNA:   3'- aGCAGUUGUUGC-----------UGC-CGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 105762 0.68 0.955178
Target:  5'- -gGUCAGgGAUGACGGgGaGGUUUCg -3'
miRNA:   3'- agCAGUUgUUGCUGCCgCgCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 105841 0.69 0.920131
Target:  5'- gCGUCA-CAGCcgaGGCGGCGCGGcgcagcgccggccauUCUCc -3'
miRNA:   3'- aGCAGUuGUUG---CUGCCGCGCC---------------AGAGa -5'
30245 5' -54.4 NC_006273.1 + 111700 0.7 0.912255
Target:  5'- aUCGUgAAC-GCGGCauucuauGCGUGGUCUCUa -3'
miRNA:   3'- -AGCAgUUGuUGCUGc------CGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 113741 0.72 0.827626
Target:  5'- gUGgCGACGGCGGCGGCGCcGUgCUCa -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCGcCA-GAGa -5'
30245 5' -54.4 NC_006273.1 + 114446 0.67 0.974087
Target:  5'- gCGUCAcCGGCGGCGGCGCcauGG-Cg-- -3'
miRNA:   3'- aGCAGUuGUUGCUGCCGCG---CCaGaga -5'
30245 5' -54.4 NC_006273.1 + 114451 0.65 0.987473
Target:  5'- uUUGUCGACGAcgugggccuauauuCGACGGCGuuGUUUUUc -3'
miRNA:   3'- -AGCAGUUGUU--------------GCUGCCGCgcCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 115478 0.66 0.98368
Target:  5'- gCGUCGGCAuAUGAagGGCGCGGgcggccaguacggcCUCUg -3'
miRNA:   3'- aGCAGUUGU-UGCUg-CCGCGCCa-------------GAGA- -5'
30245 5' -54.4 NC_006273.1 + 116083 0.67 0.971429
Target:  5'- gCGUCuuGCGACuaagcACGGCGUGGUC-Cg -3'
miRNA:   3'- aGCAGu-UGUUGc----UGCCGCGCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 116249 0.68 0.947204
Target:  5'- aCGUCAu--GCG-CGGCGCcGUCUCc -3'
miRNA:   3'- aGCAGUuguUGCuGCCGCGcCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 117455 0.71 0.842909
Target:  5'- uUCGUCcgaggacGACGACGACGccgcCGCGGUUUCc -3'
miRNA:   3'- -AGCAG-------UUGUUGCUGCc---GCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 117661 0.71 0.873603
Target:  5'- aCGgauGCAAaGACGGCGCGGgCUCg -3'
miRNA:   3'- aGCaguUGUUgCUGCCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 118015 0.71 0.854515
Target:  5'- aCGUCAAUAGCGACGGUggaaguggcgggcacGCGGgUUCc -3'
miRNA:   3'- aGCAGUUGUUGCUGCCG---------------CGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 123092 0.68 0.9513
Target:  5'- -gGUCGGCuGGCGccuCGGUGCGGUCg-- -3'
miRNA:   3'- agCAGUUG-UUGCu--GCCGCGCCAGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.