miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30245 5' -54.4 NC_006273.1 + 232966 0.68 0.942887
Target:  5'- cUCGggCAGCAGCcGCcGCGCGGcCUCg -3'
miRNA:   3'- -AGCa-GUUGUUGcUGcCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 231958 0.66 0.986399
Target:  5'- aCG-CAACAACGACGGgGgGGg---- -3'
miRNA:   3'- aGCaGUUGUUGCUGCCgCgCCagaga -5'
30245 5' -54.4 NC_006273.1 + 227702 1.09 0.00717
Target:  5'- aUCGUCAACAACGACGGCGCGGUCUCUg -3'
miRNA:   3'- -AGCAGUUGUUGCUGCCGCGCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 222977 0.67 0.974087
Target:  5'- -gGUUAGCAGCGGCGuGCGCaucugCUCg -3'
miRNA:   3'- agCAGUUGUUGCUGC-CGCGcca--GAGa -5'
30245 5' -54.4 NC_006273.1 + 214846 0.67 0.973829
Target:  5'- gCGUUAgccuccugcgccuGCAugG-UGGCGaCGGUCUCg -3'
miRNA:   3'- aGCAGU-------------UGUugCuGCCGC-GCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 213725 0.66 0.984744
Target:  5'- aCGUCGGCcACcaGCGcCGUGGUCUCg -3'
miRNA:   3'- aGCAGUUGuUGc-UGCcGCGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 212141 0.66 0.98036
Target:  5'- cUCGUCGGCGcuuACGGagggguguuUGGCgagcccggauccggGCGGUCUCg -3'
miRNA:   3'- -AGCAGUUGU---UGCU---------GCCG--------------CGCCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 209265 0.68 0.958841
Target:  5'- gUCGggaccgCAGCGccCGGCGGCGUauccgcaaGGUCUCg -3'
miRNA:   3'- -AGCa-----GUUGUu-GCUGCCGCG--------CCAGAGa -5'
30245 5' -54.4 NC_006273.1 + 203092 0.69 0.933581
Target:  5'- gUCG-CGGCGgucGCGACGGUGaCGGUCcCg -3'
miRNA:   3'- -AGCaGUUGU---UGCUGCCGC-GCCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 199374 0.7 0.912255
Target:  5'- --uUCAGCAGCaucUGGCGCGGUCUg- -3'
miRNA:   3'- agcAGUUGUUGcu-GCCGCGCCAGAga -5'
30245 5' -54.4 NC_006273.1 + 197740 0.66 0.984744
Target:  5'- cCGUCAACAGCGugccuuuuGCcGCGCgGGUCg-- -3'
miRNA:   3'- aGCAGUUGUUGC--------UGcCGCG-CCAGaga -5'
30245 5' -54.4 NC_006273.1 + 197185 0.72 0.835748
Target:  5'- cCGUCuccggaugAGCGGCcGCGGCGCGGgCUCg -3'
miRNA:   3'- aGCAG--------UUGUUGcUGCCGCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 197075 0.71 0.849151
Target:  5'- gCGgCAGCAGCGGCGGCGCcgacggugauggugGGUC-Cg -3'
miRNA:   3'- aGCaGUUGUUGCUGCCGCG--------------CCAGaGa -5'
30245 5' -54.4 NC_006273.1 + 197062 0.7 0.912255
Target:  5'- aCGguggCGGCGACGAcaCGGCGaCGGUCa-- -3'
miRNA:   3'- aGCa---GUUGUUGCU--GCCGC-GCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 196974 0.7 0.91051
Target:  5'- cUCGUCGcuguugccgccaccGCAGCGGCGGCGaCGGa---- -3'
miRNA:   3'- -AGCAGU--------------UGUUGCUGCCGC-GCCagaga -5'
30245 5' -54.4 NC_006273.1 + 195897 0.68 0.955178
Target:  5'- aCGUCAACAGCGGgcacUGGUGCGaGUgCUg- -3'
miRNA:   3'- aGCAGUUGUUGCU----GCCGCGC-CA-GAga -5'
30245 5' -54.4 NC_006273.1 + 192870 0.68 0.962293
Target:  5'- cUGUCAACAGCaGACGuuguGgGCGGUCg-- -3'
miRNA:   3'- aGCAGUUGUUG-CUGC----CgCGCCAGaga -5'
30245 5' -54.4 NC_006273.1 + 189956 0.67 0.974087
Target:  5'- cUCGUCGGC--CGGCGuGgGCGG-CUCg -3'
miRNA:   3'- -AGCAGUUGuuGCUGC-CgCGCCaGAGa -5'
30245 5' -54.4 NC_006273.1 + 188394 0.67 0.965538
Target:  5'- gCGUCGGgGACG-CGGUGgguCGGUUUCUc -3'
miRNA:   3'- aGCAGUUgUUGCuGCCGC---GCCAGAGA- -5'
30245 5' -54.4 NC_006273.1 + 188051 0.76 0.590664
Target:  5'- aUGaCAGCGcCGGCGGCGCGgGUCUCg -3'
miRNA:   3'- aGCaGUUGUuGCUGCCGCGC-CAGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.